Top 10 genes with highest correlation to Rv3058c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3059/cyp136 | (cc=0.8403) | info on Rv3059/cyp136 |
| Rv2633c/- | (cc=0.6602) | info on Rv2633c/- |
| Rv3295/- | (cc=0.6559) | info on Rv3295/- |
| Rv1323/fadA4 | (cc=0.6421) | info on Rv1323/fadA4 |
| Rv3056/dinP | (cc=0.6321) | info on Rv3056/dinP |
| Rv0758/phoR | (cc=0.6161) | info on Rv0758/phoR |
| Rv2499c/- | (cc=0.6155) | info on Rv2499c/- |
| Rv0136/cyp138 | (cc=0.6119) | info on Rv0136/cyp138 |
| Rv2411c/- | (cc=0.6094) | info on Rv2411c/- |
| Rv1038c/esxJ | (cc=0.6056) | info on Rv1038c/esxJ |
Correlation of Rv3058c/- with Rv0758/phoR
Normalized LFCs for Rv3058c/-:
(description and provenance of datasets)
| Rv3058c/- | Rv0758/phoR | |
| Fe_supp_jason_reseq | -0.339 | 1.258 |
| low_pH_jason_reseq | -1.275 | 1.807 |
| NO_jason_reseq | -1.42 | -3.087 |
| B6_jason_reseq | -1.367 | 2.199 |
| MHCII_jason_reseq | -0.287 | -0.252 |
| Isoniazid02 | -2.551 | -3.111 |
| Rifampicin4 | -1.375 | -2.055 |
| Ethambutol3 | 1.008 | 0.276 |
| Meropenem3 | -0.89 | 2.037 |
| Vancomycin16 | -1.971 | -0.987 |
| Rv2680_day32 | -1.059 | 1.87 |
| H37Rv_KO_MarP | 2.314 | 4.04 |
| hypoxia_3wks | -0.367 | -1.519 |
| hypoxia_6wks | -0.134 | -3.418 |
| glycerol | -1.219 | -6.0 |
| cholesterol | -2.073 | -5.874 |
| AJ | 0.255 | -5.577 |
| Bibs02 | -1.526 | -3.968 |
| Bibs02c | -1.629 | -3.403 |
| BL6 | -2.223 | -5.388 |
| BL6a | -1.871 | -4.919 |
| BXD01 | -2.739 | -5.61 |
| BXD010 | -2.712 | -4.365 |
| BXD011 | -2.487 | -5.073 |
| BXD03 | -1.704 | -5.701 |
| BXD04 | -2.414 | -5.449 |
| BXD05 | -2.911 | -5.458 |
| BXD06 | -3.679 | -5.628 |
| BXD07 | -3.23 | -6.0 |
| BXD08 | -1.966 | -5.729 |
| BXD09 | -4.27 | -6.0 |
| CAST | 0.46 | -5.027 |
| CCcont | -0.791 | -3.151 |
| DS01 | -1.879 | -4.423 |
| DS02 | -2.874 | -2.169 |
| DS04 | -3.405 | -3.031 |
| DS0c | -2.72 | -3.204 |
| GP01 | -2.006 | -3.866 |
| GP02 | -2.73 | -3.314 |
| GP0c | -3.106 | -3.317 |
| NOD | 0.672 | -3.479 |
| NZO | -0.623 | -6.0 |
| PWK | 0.51 | -5.005 |
| H37Rv_KO_CtpC | -0.211 | -3.409 |
| H37Rv_KO_CtpD | -1.019 | -1.425 |
| H37Rv_KO_Rv1272 | -2.109 | -4.864 |
| H37Rv_KO_SugABC | -3.448 | -3.756 |
| H37Rv_KO_MbtN | -2.442 | -3.599 |
| Trans05 | -2.637 | -4.881 |
| macrophage_unactivated | -1.231 | -6.0 |
| IL1 | -1.744 | -4.942 |
| Rapamycin | -1.66 | -5.518 |
| Tcell | -0.873 | -6.0 |
| GMCSF | -1.164 | -6.0 |
| IFNab | -3.516 | -6.0 |
| IFNg | -1.625 | -6.0 |
| IFNg_GMCSF1 | -1.91 | -6.0 |
| Rv1432_day32 | -2.632 | 0.18 |
| Rv1565c_day32 | 0.069 | 2.088 |
| secA2_input | 0.609 | -1.115 |
| delta_Rv3594 | -1.138 | -5.632 |
| delta_Rv3717 | -2.022 | -3.301 |
| delta_Rv3811 | -1.553 | -5.661 |
| delta_Rv0954 | 0.774 | -0.881 |
| PonA1 | 2.176 | 1.487 |
| EccD1_KO | -0.398 | -1.973 |
| EspI_KO | -0.22 | -1.84 |
| PE35_KO | 0.831 | -0.058 |
| PPE68_KO | 0.666 | -0.976 |
| glycerol2 | 4.618 | -0.68 |
| lignocerate | 2.532 | 0.0 |
| oleate | 0.679 | 2.006 |
| phosphatidylcholine | 5.238 | 6.0 |
| acetate | 0.53 | -1.342 |
| glucAc | -0.159 | -0.964 |
| Rv0950ko | 0.362 | -0.296 |
| Rv1096ko | -0.09 | -0.296 |
| Rv3684ko | 0.282 | 0.301 |
| delta_otsA_trehalose | -0.217 | -1.214 |