Top 10 genes with highest correlation to Rv2943A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2944/- | (cc=0.5501) | info on Rv2944/- |
| Rv1735c/- | (cc=0.5195) | info on Rv1735c/- |
| Rv0753c/mmsA | (cc=0.5165) | info on Rv0753c/mmsA |
| Rv0852/fadD16 | (cc=0.4993) | info on Rv0852/fadD16 |
| Rv2484c/- | (cc=0.4935) | info on Rv2484c/- |
| Rv0901/- | (cc=0.4888) | info on Rv0901/- |
| Rv2483c/plsC | (cc=0.4811) | info on Rv2483c/plsC |
| Rv0840c/pip | (cc=0.4805) | info on Rv0840c/pip |
| Rv1041c/- | (cc=0.4796) | info on Rv1041c/- |
| Rv1864c/- | (cc=0.4701) | info on Rv1864c/- |
Correlation of Rv2943A/- with Rv0852/fadD16
Normalized LFCs for Rv2943A/-:
(description and provenance of datasets)
| Rv2943A/- | Rv0852/fadD16 | |
| Fe_supp_jason_reseq | -1.397 | -0.617 |
| low_pH_jason_reseq | -0.763 | -0.499 |
| NO_jason_reseq | -0.69 | -0.197 |
| B6_jason_reseq | -0.779 | 0.467 |
| MHCII_jason_reseq | -0.465 | 0.671 |
| Isoniazid02 | 0.556 | -1.106 |
| Rifampicin4 | -0.785 | 0.571 |
| Ethambutol3 | 0.293 | 1.153 |
| Meropenem3 | -0.165 | 0.333 |
| Vancomycin16 | 0.0 | -0.348 |
| Rv2680_day32 | -3.118 | -0.726 |
| H37Rv_KO_MarP | 0.073 | 0.872 |
| hypoxia_3wks | -0.371 | 0.758 |
| hypoxia_6wks | 0.24 | 0.837 |
| glycerol | -0.572 | 0.0 |
| cholesterol | -1.167 | 0.244 |
| AJ | -0.324 | 0.872 |
| Bibs02 | -0.751 | 0.701 |
| Bibs02c | 0.993 | 0.502 |
| BL6 | -0.723 | -0.504 |
| BL6a | 0.891 | 0.492 |
| BXD01 | -1.335 | -0.724 |
| BXD010 | -1.557 | -1.058 |
| BXD011 | 0.615 | 0.227 |
| BXD03 | -2.275 | -0.481 |
| BXD04 | -1.503 | -0.027 |
| BXD05 | -0.381 | -0.419 |
| BXD06 | -1.323 | -0.516 |
| BXD07 | -0.8 | -0.795 |
| BXD08 | -1.318 | -0.536 |
| BXD09 | -1.056 | -0.5 |
| CAST | 0.088 | -0.234 |
| CCcont | -1.879 | -1.591 |
| DS01 | 1.519 | 0.376 |
| DS02 | 1.172 | -0.525 |
| DS04 | 2.334 | 0.465 |
| DS0c | -0.578 | -0.327 |
| GP01 | -1.799 | 0.627 |
| GP02 | 0.462 | -0.494 |
| GP0c | -1.693 | -0.18 |
| NOD | -1.513 | 0.072 |
| NZO | -0.6 | -0.9 |
| PWK | 0.075 | -0.32 |
| H37Rv_KO_CtpC | -1.356 | -0.578 |
| H37Rv_KO_CtpD | -2.405 | 0.014 |
| H37Rv_KO_Rv1272 | 1.726 | 0.338 |
| H37Rv_KO_SugABC | -1.087 | 1.581 |
| H37Rv_KO_MbtN | -0.891 | -0.877 |
| Trans05 | 1.005 | 1.035 |
| macrophage_unactivated | -1.96 | -0.691 |
| IL1 | -1.427 | -0.445 |
| Rapamycin | -1.58 | -0.896 |
| Tcell | -1.567 | -0.065 |
| GMCSF | -1.74 | -0.903 |
| IFNab | 0.073 | -0.958 |
| IFNg | -2.424 | -0.78 |
| IFNg_GMCSF1 | -1.106 | 0.707 |
| Rv1432_day32 | 0.412 | -0.266 |
| Rv1565c_day32 | 1.063 | 0.979 |
| secA2_input | -1.999 | -0.744 |
| delta_Rv3594 | -1.676 | 0.035 |
| delta_Rv3717 | -0.938 | -0.493 |
| delta_Rv3811 | -1.166 | -0.412 |
| delta_Rv0954 | 0.652 | 1.202 |
| PonA1 | -0.426 | -0.886 |
| EccD1_KO | 1.848 | 0.608 |
| EspI_KO | 0.633 | 0.274 |
| PE35_KO | 1.902 | 0.589 |
| PPE68_KO | 1.411 | 0.864 |
| glycerol2 | -1.477 | -0.125 |
| lignocerate | -0.617 | -0.307 |
| oleate | 0.074 | 0.231 |
| phosphatidylcholine | -0.413 | -0.168 |
| acetate | -0.283 | 0.0 |
| glucAc | -0.98 | -0.713 |
| Rv0950ko | 1.737 | 0.06 |
| Rv1096ko | 1.188 | 1.095 |
| Rv3684ko | 2.066 | 1.133 |
| delta_otsA_trehalose | 1.161 | -0.084 |