Top 10 genes with highest correlation to Rv2920c/amt:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3295/- | (cc=0.6011) | info on Rv3295/- |
| Rv3480c/- | (cc=0.5453) | info on Rv3480c/- |
| Rv1192/- | (cc=0.5408) | info on Rv1192/- |
| Rv2669/- | (cc=0.5378) | info on Rv2669/- |
| Rv3641c/fic | (cc=0.5367) | info on Rv3641c/fic |
| Rv1351/- | (cc=0.53) | info on Rv1351/- |
| Rv0887c/- | (cc=0.5292) | info on Rv0887c/- |
| Rv1291c/- | (cc=0.5273) | info on Rv1291c/- |
| Rv2633c/- | (cc=0.5241) | info on Rv2633c/- |
| Rv1180/pks3 | (cc=0.5236) | info on Rv1180/pks3 |
Correlation of Rv2920c/amt with Rv3295/-
Normalized LFCs for Rv2920c/amt:
(description and provenance of datasets)
| Rv2920c/amt | Rv3295/- | |
| Fe_supp_jason_reseq | 0.45 | -0.311 |
| low_pH_jason_reseq | -0.564 | -1.467 |
| NO_jason_reseq | 0.748 | 0.399 |
| B6_jason_reseq | 0.818 | 1.709 |
| MHCII_jason_reseq | 1.689 | 2.745 |
| Isoniazid02 | 0.036 | -0.08 |
| Rifampicin4 | 0.0 | -0.736 |
| Ethambutol3 | 0.19 | -0.766 |
| Meropenem3 | -0.126 | 1.594 |
| Vancomycin16 | 0.0 | -2.144 |
| Rv2680_day32 | -0.647 | -0.028 |
| H37Rv_KO_MarP | 0.133 | 0.872 |
| hypoxia_3wks | -0.044 | 0.04 |
| hypoxia_6wks | -0.184 | 0.069 |
| glycerol | -0.532 | -1.066 |
| cholesterol | -0.347 | -0.911 |
| AJ | 0.086 | -0.094 |
| Bibs02 | 0.197 | -0.197 |
| Bibs02c | 0.153 | -0.488 |
| BL6 | -0.86 | -1.617 |
| BL6a | -0.725 | -1.21 |
| BXD01 | -0.12 | -2.04 |
| BXD010 | -0.379 | -1.261 |
| BXD011 | -0.623 | -1.45 |
| BXD03 | -0.506 | -1.975 |
| BXD04 | 0.662 | -1.206 |
| BXD05 | -0.541 | -1.799 |
| BXD06 | -0.238 | -1.84 |
| BXD07 | -1.003 | -1.907 |
| BXD08 | -0.511 | -2.202 |
| BXD09 | -0.744 | -1.692 |
| CAST | -0.058 | -0.377 |
| CCcont | -0.686 | -2.55 |
| DS01 | -0.029 | -0.573 |
| DS02 | -0.323 | -0.243 |
| DS04 | -0.45 | -1.214 |
| DS0c | 0.938 | -0.159 |
| GP01 | -0.051 | -0.495 |
| GP02 | -0.961 | -1.862 |
| GP0c | -1.135 | -3.192 |
| NOD | -0.028 | 0.265 |
| NZO | -0.282 | 0.438 |
| PWK | -0.101 | -0.034 |
| H37Rv_KO_CtpC | -0.827 | -1.189 |
| H37Rv_KO_CtpD | -0.658 | -0.309 |
| H37Rv_KO_Rv1272 | -0.017 | -0.822 |
| H37Rv_KO_SugABC | -0.611 | -1.536 |
| H37Rv_KO_MbtN | -0.994 | -2.764 |
| Trans05 | -1.179 | -1.09 |
| macrophage_unactivated | 0.344 | -3.033 |
| IL1 | -1.094 | -2.637 |
| Rapamycin | -0.755 | -2.998 |
| Tcell | 0.046 | -2.77 |
| GMCSF | -0.037 | -2.389 |
| IFNab | -1.521 | -4.099 |
| IFNg | -0.986 | -1.86 |
| IFNg_GMCSF1 | -1.046 | -1.555 |
| Rv1432_day32 | 0.4 | 0.528 |
| Rv1565c_day32 | 0.425 | 1.414 |
| secA2_input | -0.642 | 0.819 |
| delta_Rv3594 | 0.425 | -0.159 |
| delta_Rv3717 | -0.069 | -0.35 |
| delta_Rv3811 | -0.138 | -0.437 |
| delta_Rv0954 | 0.452 | -0.012 |
| PonA1 | -0.398 | 0.697 |
| EccD1_KO | 0.0 | -0.536 |
| EspI_KO | -0.479 | -0.442 |
| PE35_KO | 0.312 | -0.096 |
| PPE68_KO | -0.426 | 0.067 |
| glycerol2 | 0.062 | 2.42 |
| lignocerate | 0.085 | 1.125 |
| oleate | 0.204 | -0.113 |
| phosphatidylcholine | 0.109 | 2.459 |
| acetate | -0.642 | 0.436 |
| glucAc | -0.363 | 0.323 |
| Rv0950ko | 0.621 | 1.019 |
| Rv1096ko | -0.145 | 0.338 |
| Rv3684ko | 0.154 | 0.907 |
| delta_otsA_trehalose | -0.34 | 0.261 |