Top 10 genes with highest correlation to Rv2872/vapC43:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1323/fadA4 | (cc=0.6925) | info on Rv1323/fadA4 |
| Rv0379/secE2 | (cc=0.6353) | info on Rv0379/secE2 |
| Rv1834/lipZ | (cc=0.6328) | info on Rv1834/lipZ |
| Rv3354/- | (cc=0.6136) | info on Rv3354/- |
| Rv3506/fadD17 | (cc=0.6103) | info on Rv3506/fadD17 |
| Rv1999c/- | (cc=0.5921) | info on Rv1999c/- |
| Rv3196/- | (cc=0.5857) | info on Rv3196/- |
| Rv0447c/ufaA1 | (cc=0.5796) | info on Rv0447c/ufaA1 |
| Rv2599/- | (cc=0.5671) | info on Rv2599/- |
| Rv3037c/- | (cc=0.5667) | info on Rv3037c/- |
Correlation of Rv2872/vapC43 with Rv3354/-
Normalized LFCs for Rv2872/vapC43:
(description and provenance of datasets)
| Rv2872/vapC43 | Rv3354/- | |
| Fe_supp_jason_reseq | -0.658 | -1.138 |
| low_pH_jason_reseq | -1.364 | -0.381 |
| NO_jason_reseq | -0.837 | -0.793 |
| B6_jason_reseq | -0.762 | 0.985 |
| MHCII_jason_reseq | 0.13 | 1.019 |
| Isoniazid02 | -0.144 | 1.043 |
| Rifampicin4 | 0.084 | 0.125 |
| Ethambutol3 | 0.76 | 0.398 |
| Meropenem3 | 0.03 | 1.179 |
| Vancomycin16 | 0.212 | 0.162 |
| Rv2680_day32 | -0.647 | 0.659 |
| H37Rv_KO_MarP | 0.514 | 0.422 |
| hypoxia_3wks | -0.203 | -0.347 |
| hypoxia_6wks | 0.393 | -0.595 |
| glycerol | -1.207 | 0.674 |
| cholesterol | -0.346 | 0.892 |
| AJ | -0.166 | -0.171 |
| Bibs02 | -0.131 | -0.029 |
| Bibs02c | 0.126 | 0.596 |
| BL6 | -0.108 | -0.912 |
| BL6a | -0.809 | -0.067 |
| BXD01 | -1.443 | -1.687 |
| BXD010 | -2.081 | -1.434 |
| BXD011 | -0.963 | -2.812 |
| BXD03 | -1.445 | -2.487 |
| BXD04 | -1.754 | -1.729 |
| BXD05 | -1.707 | -1.146 |
| BXD06 | -1.292 | -1.932 |
| BXD07 | -1.149 | -2.262 |
| BXD08 | -1.94 | -1.667 |
| BXD09 | -1.41 | -2.542 |
| CAST | -0.234 | 0.097 |
| CCcont | -1.087 | -1.82 |
| DS01 | -0.142 | -0.077 |
| DS02 | 0.008 | 0.269 |
| DS04 | -1.453 | 0.395 |
| DS0c | -0.261 | -0.597 |
| GP01 | -0.672 | -1.486 |
| GP02 | -0.6 | -0.295 |
| GP0c | -1.317 | -0.754 |
| NOD | 1.611 | -0.169 |
| NZO | -0.705 | 0.127 |
| PWK | -0.722 | 0.367 |
| H37Rv_KO_CtpC | -1.032 | -0.788 |
| H37Rv_KO_CtpD | -0.109 | -1.146 |
| H37Rv_KO_Rv1272 | -0.143 | -0.927 |
| H37Rv_KO_SugABC | -0.472 | -0.855 |
| H37Rv_KO_MbtN | -0.722 | -1.624 |
| Trans05 | -0.023 | -0.244 |
| macrophage_unactivated | -1.121 | -1.654 |
| IL1 | -0.774 | -1.649 |
| Rapamycin | -0.531 | -1.034 |
| Tcell | -0.766 | -1.473 |
| GMCSF | -0.586 | -2.118 |
| IFNab | -0.868 | -2.056 |
| IFNg | -0.27 | -0.949 |
| IFNg_GMCSF1 | 0.635 | -0.641 |
| Rv1432_day32 | 0.528 | 0.3 |
| Rv1565c_day32 | 0.355 | 0.635 |
| secA2_input | 0.559 | 0.645 |
| delta_Rv3594 | -0.69 | -0.395 |
| delta_Rv3717 | -0.267 | -0.21 |
| delta_Rv3811 | -0.928 | 0.592 |
| delta_Rv0954 | -0.074 | 0.58 |
| PonA1 | -0.092 | -0.802 |
| EccD1_KO | 1.121 | 1.217 |
| EspI_KO | 0.048 | 1.201 |
| PE35_KO | 1.015 | 0.204 |
| PPE68_KO | 0.403 | 1.254 |
| glycerol2 | 0.195 | 1.595 |
| lignocerate | 0.452 | 1.672 |
| oleate | -0.021 | 0.822 |
| phosphatidylcholine | 0.389 | 1.291 |
| acetate | 0.318 | 1.047 |
| glucAc | 1.198 | 1.449 |
| Rv0950ko | 0.582 | 0.365 |
| Rv1096ko | 1.613 | 0.268 |
| Rv3684ko | 1.261 | 0.933 |
| delta_otsA_trehalose | -0.62 | 0.808 |