Top 10 genes with highest correlation to Rv2854/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1075c/- | (cc=0.5395) | info on Rv1075c/- |
| Rv0837c/- | (cc=0.5222) | info on Rv0837c/- |
| Rv1976c/- | (cc=0.4611) | info on Rv1976c/- |
| Rv0982/mprB | (cc=0.451) | info on Rv0982/mprB |
| Rv2042c/- | (cc=0.4489) | info on Rv2042c/- |
| Rv2180c/- | (cc=0.4462) | info on Rv2180c/- |
| Rv1638A/- | (cc=0.4454) | info on Rv1638A/- |
| Rv3392c/cmaA1 | (cc=0.4349) | info on Rv3392c/cmaA1 |
| Rv1149/- | (cc=0.4282) | info on Rv1149/- |
| Rv0461/- | (cc=0.4258) | info on Rv0461/- |
Correlation of Rv2854/- with Rv1638A/-
Normalized LFCs for Rv2854/-:
(description and provenance of datasets)
| Rv2854/- | Rv1638A/- | |
| Fe_supp_jason_reseq | -0.189 | 0.74 |
| low_pH_jason_reseq | -0.485 | -0.192 |
| NO_jason_reseq | -0.457 | 0.415 |
| B6_jason_reseq | -0.093 | 0.982 |
| MHCII_jason_reseq | 0.78 | 0.893 |
| Isoniazid02 | -0.627 | 0.0 |
| Rifampicin4 | 0.547 | -0.374 |
| Ethambutol3 | 0.963 | -0.168 |
| Meropenem3 | -1.072 | -0.165 |
| Vancomycin16 | 0.082 | -0.366 |
| Rv2680_day32 | -0.161 | 0.0 |
| H37Rv_KO_MarP | -0.443 | -0.995 |
| hypoxia_3wks | 0.447 | 0.08 |
| hypoxia_6wks | -0.123 | 1.038 |
| glycerol | -0.455 | -0.199 |
| cholesterol | -0.48 | -1.288 |
| AJ | 0.163 | -1.708 |
| Bibs02 | -0.449 | 0.473 |
| Bibs02c | -0.196 | -1.694 |
| BL6 | 0.248 | -1.608 |
| BL6a | 0.0 | -0.439 |
| BXD01 | -0.168 | -1.055 |
| BXD010 | 0.119 | -1.548 |
| BXD011 | -0.494 | -0.64 |
| BXD03 | -0.238 | 0.062 |
| BXD04 | 0.326 | -1.406 |
| BXD05 | 0.545 | 0.444 |
| BXD06 | -0.21 | -0.296 |
| BXD07 | 0.097 | -1.052 |
| BXD08 | 0.053 | -0.032 |
| BXD09 | -0.094 | -0.138 |
| CAST | -0.976 | -0.577 |
| CCcont | -0.561 | -1.597 |
| DS01 | 0.094 | -0.814 |
| DS02 | -0.09 | -0.359 |
| DS04 | 0.136 | -0.216 |
| DS0c | -0.222 | -0.418 |
| GP01 | -1.208 | -2.256 |
| GP02 | -1.538 | -1.901 |
| GP0c | -0.616 | -2.723 |
| NOD | -0.483 | -0.81 |
| NZO | -0.204 | -0.12 |
| PWK | -0.831 | -0.023 |
| H37Rv_KO_CtpC | 0.621 | -2.535 |
| H37Rv_KO_CtpD | -0.507 | -2.767 |
| H37Rv_KO_Rv1272 | -0.598 | -1.216 |
| H37Rv_KO_SugABC | -0.742 | 0.812 |
| H37Rv_KO_MbtN | -0.296 | -2.355 |
| Trans05 | -0.417 | -1.441 |
| macrophage_unactivated | 0.732 | 0.17 |
| IL1 | -0.282 | 0.264 |
| Rapamycin | 0.239 | -0.473 |
| Tcell | 0.075 | -0.775 |
| GMCSF | -0.349 | 0.496 |
| IFNab | -0.142 | 0.986 |
| IFNg | 0.62 | 0.588 |
| IFNg_GMCSF1 | 0.412 | -1.247 |
| Rv1432_day32 | -0.196 | 0.0 |
| Rv1565c_day32 | 0.859 | 0.0 |
| secA2_input | 0.402 | 0.598 |
| delta_Rv3594 | 0.052 | 4.505 |
| delta_Rv3717 | 0.793 | 2.81 |
| delta_Rv3811 | 1.034 | 2.748 |
| delta_Rv0954 | 1.358 | 1.553 |
| PonA1 | 1.193 | 4.464 |
| EccD1_KO | 0.329 | 0.194 |
| EspI_KO | -0.148 | 2.938 |
| PE35_KO | -0.312 | 0.796 |
| PPE68_KO | 0.054 | -0.195 |
| glycerol2 | -0.652 | -1.065 |
| lignocerate | -0.783 | -1.34 |
| oleate | 0.011 | 0.15 |
| phosphatidylcholine | -0.588 | -1.199 |
| acetate | -0.716 | -0.622 |
| glucAc | -1.548 | -2.082 |
| Rv0950ko | 0.678 | 0.874 |
| Rv1096ko | 0.679 | 3.685 |
| Rv3684ko | 0.383 | 0.498 |
| delta_otsA_trehalose | -2.484 | -0.468 |