Top 10 genes with highest correlation to Rv2778c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2275/- | (cc=0.5281) | info on Rv2275/- |
| Rv0844c/narL | (cc=0.5199) | info on Rv0844c/narL |
| Rv0260c/- | (cc=0.5162) | info on Rv0260c/- |
| Rv2809/- | (cc=0.5132) | info on Rv2809/- |
| Rv2481c/- | (cc=0.4888) | info on Rv2481c/- |
| Rv1583c/- | (cc=0.4835) | info on Rv1583c/- |
| Rv1504c/- | (cc=0.479) | info on Rv1504c/- |
| Rv1167c/- | (cc=0.4756) | info on Rv1167c/- |
| Rv1548c/PPE21 | (cc=0.4716) | info on Rv1548c/PPE21 |
| Rv2818c/- | (cc=0.466) | info on Rv2818c/- |
Correlation of Rv2778c/- with Rv2809/-
Normalized LFCs for Rv2778c/-:
(description and provenance of datasets)
| Rv2778c/- | Rv2809/- | |
| Fe_supp_jason_reseq | 0.668 | 0.592 |
| low_pH_jason_reseq | 0.517 | -0.236 |
| NO_jason_reseq | -0.087 | 0.62 |
| B6_jason_reseq | -0.436 | 0.436 |
| MHCII_jason_reseq | -0.471 | 1.042 |
| Isoniazid02 | -0.291 | -0.825 |
| Rifampicin4 | -0.046 | 0.246 |
| Ethambutol3 | -0.251 | 1.547 |
| Meropenem3 | -0.732 | -0.146 |
| Vancomycin16 | -0.854 | -0.032 |
| Rv2680_day32 | -2.125 | -2.243 |
| H37Rv_KO_MarP | 0.062 | -0.476 |
| hypoxia_3wks | 0.267 | -0.271 |
| hypoxia_6wks | 0.079 | 0.098 |
| glycerol | 0.569 | -2.478 |
| cholesterol | -0.068 | -0.07 |
| AJ | 0.413 | 0.087 |
| Bibs02 | -0.971 | -0.126 |
| Bibs02c | -1.384 | -1.253 |
| BL6 | 0.865 | 1.036 |
| BL6a | 0.306 | -0.019 |
| BXD01 | 0.507 | 1.196 |
| BXD010 | 0.37 | 1.083 |
| BXD011 | 0.447 | 0.899 |
| BXD03 | -0.051 | 0.735 |
| BXD04 | 0.374 | 1.117 |
| BXD05 | 1.071 | 1.149 |
| BXD06 | 1.063 | 0.414 |
| BXD07 | 0.951 | 0.936 |
| BXD08 | 1.473 | 1.493 |
| BXD09 | 0.809 | 0.747 |
| CAST | -0.367 | -0.022 |
| CCcont | 0.794 | 1.331 |
| DS01 | 0.106 | -0.186 |
| DS02 | 0.266 | 0.414 |
| DS04 | -0.752 | -0.946 |
| DS0c | -1.185 | -0.585 |
| GP01 | 0.563 | 0.667 |
| GP02 | -0.072 | 1.361 |
| GP0c | -0.651 | 0.599 |
| NOD | -2.11 | 0.895 |
| NZO | -0.056 | 0.618 |
| PWK | -0.608 | -0.301 |
| H37Rv_KO_CtpC | 1.184 | 1.032 |
| H37Rv_KO_CtpD | 0.134 | -1.764 |
| H37Rv_KO_Rv1272 | 1.414 | 1.858 |
| H37Rv_KO_SugABC | -1.521 | -0.048 |
| H37Rv_KO_MbtN | 2.179 | 0.196 |
| Trans05 | 0.036 | 1.384 |
| macrophage_unactivated | 0.483 | 0.552 |
| IL1 | -1.121 | -1.48 |
| Rapamycin | -0.973 | -0.509 |
| Tcell | -0.254 | 0.57 |
| GMCSF | 0.768 | -0.71 |
| IFNab | -0.115 | -1.345 |
| IFNg | 1.077 | 0.0 |
| IFNg_GMCSF1 | -0.606 | 0.355 |
| Rv1432_day32 | -0.043 | -0.729 |
| Rv1565c_day32 | -0.665 | -0.667 |
| secA2_input | -2.037 | -0.883 |
| delta_Rv3594 | -0.343 | 0.125 |
| delta_Rv3717 | -1.024 | 0.045 |
| delta_Rv3811 | -1.063 | 0.439 |
| delta_Rv0954 | -1.128 | -0.562 |
| PonA1 | -0.689 | -2.086 |
| EccD1_KO | 0.22 | 0.414 |
| EspI_KO | 0.066 | 0.964 |
| PE35_KO | 0.811 | 1.219 |
| PPE68_KO | 0.579 | 1.494 |
| glycerol2 | 0.479 | 0.247 |
| lignocerate | 0.491 | 0.933 |
| oleate | 0.109 | -0.072 |
| phosphatidylcholine | 0.543 | 0.569 |
| acetate | 0.449 | 0.702 |
| glucAc | 0.337 | 0.594 |
| Rv0950ko | -0.983 | -0.914 |
| Rv1096ko | -1.336 | -2.015 |
| Rv3684ko | -1.418 | -1.385 |
| delta_otsA_trehalose | -0.367 | 0.0 |