Top 10 genes with highest correlation to Rv2729c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0043c/- | (cc=0.5184) | info on Rv0043c/- |
| Rv3208A/TB9.4 | (cc=0.4671) | info on Rv3208A/TB9.4 |
| Rv2212/- | (cc=0.452) | info on Rv2212/- |
| Rv1999c/- | (cc=0.442) | info on Rv1999c/- |
| Rv3705A/- | (cc=0.4417) | info on Rv3705A/- |
| Rv3491/- | (cc=0.4386) | info on Rv3491/- |
| Rv0319/pcp | (cc=0.4354) | info on Rv0319/pcp |
| Rv3059/cyp136 | (cc=0.4316) | info on Rv3059/cyp136 |
| Rv1725c/- | (cc=0.4291) | info on Rv1725c/- |
| Rv2713/sthA | (cc=0.4224) | info on Rv2713/sthA |
Correlation of Rv2729c/- with Rv3491/-
Normalized LFCs for Rv2729c/-:
(description and provenance of datasets)
| Rv2729c/- | Rv3491/- | |
| Fe_supp_jason_reseq | 0.5 | 0.115 |
| low_pH_jason_reseq | -0.388 | -0.229 |
| NO_jason_reseq | 0.129 | -0.024 |
| B6_jason_reseq | 0.352 | 0.176 |
| MHCII_jason_reseq | -0.017 | -1.121 |
| Isoniazid02 | -0.76 | -0.515 |
| Rifampicin4 | 0.864 | 0.19 |
| Ethambutol3 | 0.064 | 1.906 |
| Meropenem3 | -0.107 | 0.788 |
| Vancomycin16 | 0.029 | 0.024 |
| Rv2680_day32 | -0.165 | 0.514 |
| H37Rv_KO_MarP | 0.212 | 1.047 |
| hypoxia_3wks | -0.359 | -0.239 |
| hypoxia_6wks | -0.908 | -0.388 |
| glycerol | 0.0 | -0.086 |
| cholesterol | -0.537 | -0.014 |
| AJ | -0.15 | -0.748 |
| Bibs02 | 0.147 | -0.532 |
| Bibs02c | -0.587 | -1.44 |
| BL6 | -0.07 | 0.299 |
| BL6a | -0.449 | -0.947 |
| BXD01 | -0.155 | 0.63 |
| BXD010 | -0.071 | 0.423 |
| BXD011 | 0.021 | -0.13 |
| BXD03 | -0.637 | -0.677 |
| BXD04 | -0.683 | 0.536 |
| BXD05 | 0.039 | 0.52 |
| BXD06 | -0.718 | -0.163 |
| BXD07 | -0.449 | 0.371 |
| BXD08 | -0.323 | -0.462 |
| BXD09 | -0.625 | -0.232 |
| CAST | -0.452 | -0.053 |
| CCcont | 0.0 | 0.34 |
| DS01 | 0.207 | 0.086 |
| DS02 | -0.055 | 0.421 |
| DS04 | -0.361 | -0.309 |
| DS0c | -0.159 | 0.06 |
| GP01 | 0.885 | 0.221 |
| GP02 | -0.08 | 1.348 |
| GP0c | 0.186 | -0.037 |
| NOD | -0.028 | -0.444 |
| NZO | -0.059 | -0.594 |
| PWK | -0.625 | -0.18 |
| H37Rv_KO_CtpC | 0.342 | -0.225 |
| H37Rv_KO_CtpD | -0.999 | -0.615 |
| H37Rv_KO_Rv1272 | 1.198 | -0.173 |
| H37Rv_KO_SugABC | -1.121 | -0.664 |
| H37Rv_KO_MbtN | -0.044 | -0.307 |
| Trans05 | 0.345 | -0.831 |
| macrophage_unactivated | 0.246 | 0.047 |
| IL1 | -0.344 | -0.744 |
| Rapamycin | -0.037 | -0.292 |
| Tcell | -0.909 | -0.101 |
| GMCSF | 0.66 | 0.198 |
| IFNab | -0.172 | -0.517 |
| IFNg | -0.083 | -0.233 |
| IFNg_GMCSF1 | -0.261 | 0.672 |
| Rv1432_day32 | -0.756 | -0.382 |
| Rv1565c_day32 | 0.387 | -0.689 |
| secA2_input | 0.177 | -0.075 |
| delta_Rv3594 | 0.75 | 0.402 |
| delta_Rv3717 | 0.36 | 0.014 |
| delta_Rv3811 | 0.467 | 0.378 |
| delta_Rv0954 | 0.125 | 0.305 |
| PonA1 | 0.723 | 0.844 |
| EccD1_KO | -0.036 | 0.411 |
| EspI_KO | 0.268 | -0.821 |
| PE35_KO | -0.365 | -0.073 |
| PPE68_KO | 0.035 | -0.106 |
| glycerol2 | 0.806 | 0.954 |
| lignocerate | 0.907 | 1.329 |
| oleate | 0.815 | 0.685 |
| phosphatidylcholine | 1.104 | 0.927 |
| acetate | 0.482 | 1.553 |
| glucAc | 0.698 | 0.944 |
| Rv0950ko | -0.16 | 0.024 |
| Rv1096ko | -1.179 | -0.148 |
| Rv3684ko | -0.851 | 0.105 |
| delta_otsA_trehalose | 0.599 | 1.736 |