Top 10 genes with highest correlation to Rv2729c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0043c/- | (cc=0.5184) | info on Rv0043c/- |
| Rv3208A/TB9.4 | (cc=0.4671) | info on Rv3208A/TB9.4 |
| Rv2212/- | (cc=0.452) | info on Rv2212/- |
| Rv1999c/- | (cc=0.442) | info on Rv1999c/- |
| Rv3705A/- | (cc=0.4417) | info on Rv3705A/- |
| Rv3491/- | (cc=0.4386) | info on Rv3491/- |
| Rv0319/pcp | (cc=0.4354) | info on Rv0319/pcp |
| Rv3059/cyp136 | (cc=0.4316) | info on Rv3059/cyp136 |
| Rv1725c/- | (cc=0.4291) | info on Rv1725c/- |
| Rv2713/sthA | (cc=0.4224) | info on Rv2713/sthA |
Correlation of Rv2729c/- with Rv2212/-
Normalized LFCs for Rv2729c/-:
(description and provenance of datasets)
| Rv2729c/- | Rv2212/- | |
| Fe_supp_jason_reseq | 0.5 | 0.494 |
| low_pH_jason_reseq | -0.388 | -0.209 |
| NO_jason_reseq | 0.129 | 0.404 |
| B6_jason_reseq | 0.352 | 1.012 |
| MHCII_jason_reseq | -0.017 | 0.151 |
| Isoniazid02 | -0.76 | 0.292 |
| Rifampicin4 | 0.864 | 0.401 |
| Ethambutol3 | 0.064 | 0.401 |
| Meropenem3 | -0.107 | -0.189 |
| Vancomycin16 | 0.029 | 0.064 |
| Rv2680_day32 | -0.165 | 0.484 |
| H37Rv_KO_MarP | 0.212 | 0.452 |
| hypoxia_3wks | -0.359 | -1.116 |
| hypoxia_6wks | -0.908 | 0.292 |
| glycerol | 0.0 | -1.018 |
| cholesterol | -0.537 | -0.12 |
| AJ | -0.15 | 0.642 |
| Bibs02 | 0.147 | -0.465 |
| Bibs02c | -0.587 | -0.33 |
| BL6 | -0.07 | 1.022 |
| BL6a | -0.449 | -0.425 |
| BXD01 | -0.155 | -0.734 |
| BXD010 | -0.071 | 0.437 |
| BXD011 | 0.021 | -0.292 |
| BXD03 | -0.637 | -0.31 |
| BXD04 | -0.683 | -0.599 |
| BXD05 | 0.039 | -0.105 |
| BXD06 | -0.718 | -0.346 |
| BXD07 | -0.449 | -0.555 |
| BXD08 | -0.323 | -0.127 |
| BXD09 | -0.625 | -0.81 |
| CAST | -0.452 | 0.15 |
| CCcont | 0.0 | -0.085 |
| DS01 | 0.207 | -0.056 |
| DS02 | -0.055 | -0.035 |
| DS04 | -0.361 | 0.119 |
| DS0c | -0.159 | -0.151 |
| GP01 | 0.885 | -0.39 |
| GP02 | -0.08 | -0.731 |
| GP0c | 0.186 | -0.053 |
| NOD | -0.028 | -0.225 |
| NZO | -0.059 | -0.199 |
| PWK | -0.625 | 0.054 |
| H37Rv_KO_CtpC | 0.342 | -0.872 |
| H37Rv_KO_CtpD | -0.999 | -0.149 |
| H37Rv_KO_Rv1272 | 1.198 | -0.022 |
| H37Rv_KO_SugABC | -1.121 | -1.303 |
| H37Rv_KO_MbtN | -0.044 | -0.081 |
| Trans05 | 0.345 | 0.296 |
| macrophage_unactivated | 0.246 | -0.388 |
| IL1 | -0.344 | -0.3 |
| Rapamycin | -0.037 | -0.74 |
| Tcell | -0.909 | -1.18 |
| GMCSF | 0.66 | 0.153 |
| IFNab | -0.172 | 0.039 |
| IFNg | -0.083 | -0.623 |
| IFNg_GMCSF1 | -0.261 | 0.374 |
| Rv1432_day32 | -0.756 | 0.086 |
| Rv1565c_day32 | 0.387 | -0.246 |
| secA2_input | 0.177 | -0.794 |
| delta_Rv3594 | 0.75 | 1.159 |
| delta_Rv3717 | 0.36 | 0.403 |
| delta_Rv3811 | 0.467 | 0.0 |
| delta_Rv0954 | 0.125 | 1.257 |
| PonA1 | 0.723 | 0.948 |
| EccD1_KO | -0.036 | 0.27 |
| EspI_KO | 0.268 | 0.399 |
| PE35_KO | -0.365 | 0.023 |
| PPE68_KO | 0.035 | 0.557 |
| glycerol2 | 0.806 | 0.872 |
| lignocerate | 0.907 | 1.78 |
| oleate | 0.815 | -0.523 |
| phosphatidylcholine | 1.104 | 1.136 |
| acetate | 0.482 | 1.504 |
| glucAc | 0.698 | 1.463 |
| Rv0950ko | -0.16 | 0.844 |
| Rv1096ko | -1.179 | 0.513 |
| Rv3684ko | -0.851 | -0.472 |
| delta_otsA_trehalose | 0.599 | 0.862 |