Top 10 genes with highest correlation to Rv2729c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0043c/- | (cc=0.5184) | info on Rv0043c/- |
| Rv3208A/TB9.4 | (cc=0.4671) | info on Rv3208A/TB9.4 |
| Rv2212/- | (cc=0.452) | info on Rv2212/- |
| Rv1999c/- | (cc=0.442) | info on Rv1999c/- |
| Rv3705A/- | (cc=0.4417) | info on Rv3705A/- |
| Rv3491/- | (cc=0.4386) | info on Rv3491/- |
| Rv0319/pcp | (cc=0.4354) | info on Rv0319/pcp |
| Rv3059/cyp136 | (cc=0.4316) | info on Rv3059/cyp136 |
| Rv1725c/- | (cc=0.4291) | info on Rv1725c/- |
| Rv2713/sthA | (cc=0.4224) | info on Rv2713/sthA |
Correlation of Rv2729c/- with Rv0043c/-
Normalized LFCs for Rv2729c/-:
(description and provenance of datasets)
| Rv2729c/- | Rv0043c/- | |
| Fe_supp_jason_reseq | 0.5 | 0.458 |
| low_pH_jason_reseq | -0.388 | 0.547 |
| NO_jason_reseq | 0.129 | 0.609 |
| B6_jason_reseq | 0.352 | 0.787 |
| MHCII_jason_reseq | -0.017 | -0.64 |
| Isoniazid02 | -0.76 | -1.308 |
| Rifampicin4 | 0.864 | 1.105 |
| Ethambutol3 | 0.064 | -0.696 |
| Meropenem3 | -0.107 | -0.2 |
| Vancomycin16 | 0.029 | 2.011 |
| Rv2680_day32 | -0.165 | -0.07 |
| H37Rv_KO_MarP | 0.212 | 1.655 |
| hypoxia_3wks | -0.359 | -1.42 |
| hypoxia_6wks | -0.908 | -1.318 |
| glycerol | 0.0 | -0.689 |
| cholesterol | -0.537 | -0.977 |
| AJ | -0.15 | -2.472 |
| Bibs02 | 0.147 | -1.089 |
| Bibs02c | -0.587 | -1.741 |
| BL6 | -0.07 | -1.491 |
| BL6a | -0.449 | -0.98 |
| BXD01 | -0.155 | -1.699 |
| BXD010 | -0.071 | -0.532 |
| BXD011 | 0.021 | -1.485 |
| BXD03 | -0.637 | -0.083 |
| BXD04 | -0.683 | -0.834 |
| BXD05 | 0.039 | -0.352 |
| BXD06 | -0.718 | -0.9 |
| BXD07 | -0.449 | -1.207 |
| BXD08 | -0.323 | -1.01 |
| BXD09 | -0.625 | -1.092 |
| CAST | -0.452 | -1.832 |
| CCcont | 0.0 | 0.413 |
| DS01 | 0.207 | -1.516 |
| DS02 | -0.055 | -1.982 |
| DS04 | -0.361 | -0.881 |
| DS0c | -0.159 | -1.686 |
| GP01 | 0.885 | -0.461 |
| GP02 | -0.08 | -1.573 |
| GP0c | 0.186 | 0.011 |
| NOD | -0.028 | -0.612 |
| NZO | -0.059 | -2.079 |
| PWK | -0.625 | -0.891 |
| H37Rv_KO_CtpC | 0.342 | -2.219 |
| H37Rv_KO_CtpD | -0.999 | 1.318 |
| H37Rv_KO_Rv1272 | 1.198 | 0.203 |
| H37Rv_KO_SugABC | -1.121 | -1.683 |
| H37Rv_KO_MbtN | -0.044 | -1.476 |
| Trans05 | 0.345 | -1.063 |
| macrophage_unactivated | 0.246 | -0.581 |
| IL1 | -0.344 | 0.368 |
| Rapamycin | -0.037 | -0.516 |
| Tcell | -0.909 | -1.414 |
| GMCSF | 0.66 | -0.618 |
| IFNab | -0.172 | -1.493 |
| IFNg | -0.083 | -1.376 |
| IFNg_GMCSF1 | -0.261 | -2.096 |
| Rv1432_day32 | -0.756 | -2.455 |
| Rv1565c_day32 | 0.387 | 0.611 |
| secA2_input | 0.177 | 0.358 |
| delta_Rv3594 | 0.75 | -0.376 |
| delta_Rv3717 | 0.36 | -0.79 |
| delta_Rv3811 | 0.467 | -0.416 |
| delta_Rv0954 | 0.125 | 1.328 |
| PonA1 | 0.723 | 1.519 |
| EccD1_KO | -0.036 | -0.756 |
| EspI_KO | 0.268 | -0.317 |
| PE35_KO | -0.365 | 0.954 |
| PPE68_KO | 0.035 | 0.502 |
| glycerol2 | 0.806 | 2.14 |
| lignocerate | 0.907 | 1.459 |
| oleate | 0.815 | 0.705 |
| phosphatidylcholine | 1.104 | 3.444 |
| acetate | 0.482 | 1.238 |
| glucAc | 0.698 | 0.896 |
| Rv0950ko | -0.16 | -0.142 |
| Rv1096ko | -1.179 | -1.381 |
| Rv3684ko | -0.851 | -1.199 |
| delta_otsA_trehalose | 0.599 | 0.15 |