Top 10 genes with highest correlation to Rv2704/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1947/- | (cc=0.539) | info on Rv1947/- |
| Rv2389c/rpfD | (cc=0.4731) | info on Rv2389c/rpfD |
| Rv1770/- | (cc=0.4697) | info on Rv1770/- |
| Rv1000c/- | (cc=0.4429) | info on Rv1000c/- |
| Rv2067c/- | (cc=0.439) | info on Rv2067c/- |
| Rv2658c/- | (cc=0.4381) | info on Rv2658c/- |
| Rv0868c/moaD2 | (cc=0.4188) | info on Rv0868c/moaD2 |
| Rv3840/- | (cc=0.4148) | info on Rv3840/- |
| Rv0159c/PE3 | (cc=0.4089) | info on Rv0159c/PE3 |
| Rv2976c/ung | (cc=0.4081) | info on Rv2976c/ung |
Correlation of Rv2704/- with Rv2976c/ung
Normalized LFCs for Rv2704/-:
(description and provenance of datasets)
| Rv2704/- | Rv2976c/ung | |
| Fe_supp_jason_reseq | -0.524 | -0.213 |
| low_pH_jason_reseq | -1.223 | -0.149 |
| NO_jason_reseq | 0.446 | -0.173 |
| B6_jason_reseq | 0.083 | -0.437 |
| MHCII_jason_reseq | 0.254 | 0.633 |
| Isoniazid02 | -1.029 | -0.06 |
| Rifampicin4 | 0.449 | 0.417 |
| Ethambutol3 | -0.916 | 1.3 |
| Meropenem3 | 0.277 | 0.117 |
| Vancomycin16 | 0.0 | 0.31 |
| Rv2680_day32 | -0.596 | -1.669 |
| H37Rv_KO_MarP | -0.439 | -0.47 |
| hypoxia_3wks | 0.195 | 1.603 |
| hypoxia_6wks | -0.616 | 0.48 |
| glycerol | 0.151 | 1.442 |
| cholesterol | 0.028 | -0.415 |
| AJ | -0.405 | -0.309 |
| Bibs02 | 0.16 | 0.898 |
| Bibs02c | -0.291 | 0.735 |
| BL6 | 0.321 | -1.761 |
| BL6a | 0.138 | 0.867 |
| BXD01 | -0.276 | 1.158 |
| BXD010 | 0.537 | 0.33 |
| BXD011 | 0.175 | -0.4 |
| BXD03 | 0.16 | 1.626 |
| BXD04 | 0.223 | 0.236 |
| BXD05 | 0.547 | 0.391 |
| BXD06 | 0.576 | 0.408 |
| BXD07 | 0.11 | 0.944 |
| BXD08 | -0.318 | 0.0 |
| BXD09 | 0.227 | 0.88 |
| CAST | 0.184 | 0.594 |
| CCcont | -0.617 | -0.601 |
| DS01 | -0.176 | 2.034 |
| DS02 | 0.169 | 1.793 |
| DS04 | 0.214 | 0.468 |
| DS0c | 0.064 | 1.383 |
| GP01 | 0.087 | 0.912 |
| GP02 | 0.714 | 1.42 |
| GP0c | -0.067 | 0.622 |
| NOD | 0.508 | 1.764 |
| NZO | -0.65 | -1.618 |
| PWK | 0.279 | 0.269 |
| H37Rv_KO_CtpC | -0.051 | -1.935 |
| H37Rv_KO_CtpD | -0.442 | -1.889 |
| H37Rv_KO_Rv1272 | 0.57 | -1.144 |
| H37Rv_KO_SugABC | -0.426 | 1.012 |
| H37Rv_KO_MbtN | 0.21 | 0.141 |
| Trans05 | -0.687 | -0.144 |
| macrophage_unactivated | 0.287 | 1.401 |
| IL1 | 0.727 | 0.273 |
| Rapamycin | 0.648 | 1.089 |
| Tcell | 0.251 | 1.724 |
| GMCSF | 1.035 | 1.352 |
| IFNab | 0.868 | 0.278 |
| IFNg | 0.663 | -0.329 |
| IFNg_GMCSF1 | 0.553 | -0.386 |
| Rv1432_day32 | -0.01 | 0.382 |
| Rv1565c_day32 | -0.166 | 0.0 |
| secA2_input | -0.069 | -1.246 |
| delta_Rv3594 | -0.219 | -1.455 |
| delta_Rv3717 | -0.306 | -0.629 |
| delta_Rv3811 | -0.601 | -1.938 |
| delta_Rv0954 | -0.705 | -1.606 |
| PonA1 | -0.605 | -1.07 |
| EccD1_KO | 0.069 | 2.312 |
| EspI_KO | 0.151 | 0.456 |
| PE35_KO | 0.245 | 0.957 |
| PPE68_KO | -0.086 | 0.432 |
| glycerol2 | -0.021 | -0.957 |
| lignocerate | -0.347 | -1.889 |
| oleate | 0.21 | 0.469 |
| phosphatidylcholine | -0.325 | -1.119 |
| acetate | -0.025 | -1.378 |
| glucAc | -1.153 | -2.208 |
| Rv0950ko | -0.145 | -0.519 |
| Rv1096ko | -0.866 | -1.354 |
| Rv3684ko | -0.206 | 1.172 |
| delta_otsA_trehalose | 0.659 | -0.096 |