Top 10 genes with highest correlation to Rv2704/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1947/- | (cc=0.539) | info on Rv1947/- |
| Rv2389c/rpfD | (cc=0.4731) | info on Rv2389c/rpfD |
| Rv1770/- | (cc=0.4697) | info on Rv1770/- |
| Rv1000c/- | (cc=0.4429) | info on Rv1000c/- |
| Rv2067c/- | (cc=0.439) | info on Rv2067c/- |
| Rv2658c/- | (cc=0.4381) | info on Rv2658c/- |
| Rv0868c/moaD2 | (cc=0.4188) | info on Rv0868c/moaD2 |
| Rv3840/- | (cc=0.4148) | info on Rv3840/- |
| Rv0159c/PE3 | (cc=0.4089) | info on Rv0159c/PE3 |
| Rv2976c/ung | (cc=0.4081) | info on Rv2976c/ung |
Correlation of Rv2704/- with Rv1947/-
Normalized LFCs for Rv2704/-:
(description and provenance of datasets)
| Rv2704/- | Rv1947/- | |
| Fe_supp_jason_reseq | -0.524 | -0.837 |
| low_pH_jason_reseq | -1.223 | -1.733 |
| NO_jason_reseq | 0.446 | -0.557 |
| B6_jason_reseq | 0.083 | -0.522 |
| MHCII_jason_reseq | 0.254 | -0.579 |
| Isoniazid02 | -1.029 | -3.635 |
| Rifampicin4 | 0.449 | 0.36 |
| Ethambutol3 | -0.916 | -3.496 |
| Meropenem3 | 0.277 | -2.943 |
| Vancomycin16 | 0.0 | -1.727 |
| Rv2680_day32 | -0.596 | -0.791 |
| H37Rv_KO_MarP | -0.439 | -0.776 |
| hypoxia_3wks | 0.195 | 0.239 |
| hypoxia_6wks | -0.616 | -0.182 |
| glycerol | 0.151 | -0.575 |
| cholesterol | 0.028 | -0.088 |
| AJ | -0.405 | 0.37 |
| Bibs02 | 0.16 | 0.156 |
| Bibs02c | -0.291 | 0.406 |
| BL6 | 0.321 | 0.333 |
| BL6a | 0.138 | 0.234 |
| BXD01 | -0.276 | 0.359 |
| BXD010 | 0.537 | 1.362 |
| BXD011 | 0.175 | 0.022 |
| BXD03 | 0.16 | 1.131 |
| BXD04 | 0.223 | 0.618 |
| BXD05 | 0.547 | 0.617 |
| BXD06 | 0.576 | 0.74 |
| BXD07 | 0.11 | 0.49 |
| BXD08 | -0.318 | 0.143 |
| BXD09 | 0.227 | 0.431 |
| CAST | 0.184 | 0.053 |
| CCcont | -0.617 | -0.335 |
| DS01 | -0.176 | -0.267 |
| DS02 | 0.169 | -1.111 |
| DS04 | 0.214 | 0.443 |
| DS0c | 0.064 | 0.506 |
| GP01 | 0.087 | -0.715 |
| GP02 | 0.714 | -1.404 |
| GP0c | -0.067 | 0.842 |
| NOD | 0.508 | -0.623 |
| NZO | -0.65 | -0.998 |
| PWK | 0.279 | -0.301 |
| H37Rv_KO_CtpC | -0.051 | 0.966 |
| H37Rv_KO_CtpD | -0.442 | 0.688 |
| H37Rv_KO_Rv1272 | 0.57 | -0.413 |
| H37Rv_KO_SugABC | -0.426 | 2.349 |
| H37Rv_KO_MbtN | 0.21 | -0.395 |
| Trans05 | -0.687 | 0.558 |
| macrophage_unactivated | 0.287 | 1.004 |
| IL1 | 0.727 | 0.958 |
| Rapamycin | 0.648 | 1.897 |
| Tcell | 0.251 | 0.844 |
| GMCSF | 1.035 | 1.36 |
| IFNab | 0.868 | 2.143 |
| IFNg | 0.663 | 1.451 |
| IFNg_GMCSF1 | 0.553 | 2.046 |
| Rv1432_day32 | -0.01 | -1.632 |
| Rv1565c_day32 | -0.166 | -0.303 |
| secA2_input | -0.069 | 0.011 |
| delta_Rv3594 | -0.219 | 0.076 |
| delta_Rv3717 | -0.306 | 0.143 |
| delta_Rv3811 | -0.601 | 0.718 |
| delta_Rv0954 | -0.705 | -1.416 |
| PonA1 | -0.605 | 0.048 |
| EccD1_KO | 0.069 | -0.506 |
| EspI_KO | 0.151 | -0.074 |
| PE35_KO | 0.245 | 0.65 |
| PPE68_KO | -0.086 | 0.179 |
| glycerol2 | -0.021 | 0.063 |
| lignocerate | -0.347 | -0.9 |
| oleate | 0.21 | 1.014 |
| phosphatidylcholine | -0.325 | -0.123 |
| acetate | -0.025 | -1.401 |
| glucAc | -1.153 | -2.763 |
| Rv0950ko | -0.145 | -0.615 |
| Rv1096ko | -0.866 | -2.069 |
| Rv3684ko | -0.206 | -2.168 |
| delta_otsA_trehalose | 0.659 | 3.544 |