Top 10 genes with highest correlation to Rv2622/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0104/- | (cc=0.5662) | info on Rv0104/- |
| Rv1971/mce3F | (cc=0.5174) | info on Rv1971/mce3F |
| Rv3072c/- | (cc=0.4889) | info on Rv3072c/- |
| Rv3711c/dnaQ | (cc=0.4761) | info on Rv3711c/dnaQ |
| Rv1900c/lipJ | (cc=0.4756) | info on Rv1900c/lipJ |
| Rv3703c/- | (cc=0.4695) | info on Rv3703c/- |
| Rv3086/adhD | (cc=0.4605) | info on Rv3086/adhD |
| Rv0254c/cobU | (cc=0.4515) | info on Rv0254c/cobU |
| Rv0588/yrbE2B | (cc=0.4473) | info on Rv0588/yrbE2B |
| Rv0387c/- | (cc=0.4433) | info on Rv0387c/- |
Correlation of Rv2622/- with Rv3086/adhD
Normalized LFCs for Rv2622/-:
(description and provenance of datasets)
| Rv2622/- | Rv3086/adhD | |
| Fe_supp_jason_reseq | -2.369 | -0.21 |
| low_pH_jason_reseq | -0.694 | 0.146 |
| NO_jason_reseq | -0.675 | 0.173 |
| B6_jason_reseq | -0.658 | 0.47 |
| MHCII_jason_reseq | -0.845 | 0.631 |
| Isoniazid02 | -1.765 | -1.477 |
| Rifampicin4 | -0.108 | 0.455 |
| Ethambutol3 | -0.582 | -1.22 |
| Meropenem3 | -1.55 | -0.954 |
| Vancomycin16 | -1.462 | -0.692 |
| Rv2680_day32 | -0.322 | 0.141 |
| H37Rv_KO_MarP | 0.15 | -0.059 |
| hypoxia_3wks | -0.311 | -0.53 |
| hypoxia_6wks | 0.522 | -0.031 |
| glycerol | 0.745 | -1.015 |
| cholesterol | 0.877 | -0.408 |
| AJ | -0.839 | 0.175 |
| Bibs02 | 0.535 | 0.938 |
| Bibs02c | -0.732 | -0.406 |
| BL6 | 1.405 | 0.748 |
| BL6a | -0.716 | -0.759 |
| BXD01 | -1.356 | -0.515 |
| BXD010 | -0.096 | 0.077 |
| BXD011 | 0.117 | -0.247 |
| BXD03 | -0.249 | -0.316 |
| BXD04 | -1.4 | -0.375 |
| BXD05 | -0.614 | -0.379 |
| BXD06 | -1.15 | -0.312 |
| BXD07 | -1.67 | -0.331 |
| BXD08 | -0.089 | 0.208 |
| BXD09 | -0.508 | 0.174 |
| CAST | -0.886 | 0.093 |
| CCcont | -1.206 | 0.153 |
| DS01 | -0.137 | -0.089 |
| DS02 | -1.914 | 0.386 |
| DS04 | -0.909 | 0.417 |
| DS0c | 0.278 | 1.219 |
| GP01 | 0.524 | -0.637 |
| GP02 | 0.02 | 0.382 |
| GP0c | 0.671 | -0.395 |
| NOD | -0.786 | -0.264 |
| NZO | 0.228 | 0.065 |
| PWK | 0.894 | -0.351 |
| H37Rv_KO_CtpC | -0.957 | -1.177 |
| H37Rv_KO_CtpD | 1.241 | 0.425 |
| H37Rv_KO_Rv1272 | 0.231 | -0.54 |
| H37Rv_KO_SugABC | -0.381 | -1.133 |
| H37Rv_KO_MbtN | -0.293 | -1.373 |
| Trans05 | -0.58 | -0.411 |
| macrophage_unactivated | -1.761 | 0.038 |
| IL1 | -1.258 | -0.451 |
| Rapamycin | -0.439 | 0.037 |
| Tcell | -0.616 | -0.039 |
| GMCSF | -2.044 | 0.533 |
| IFNab | -0.082 | -0.32 |
| IFNg | -1.438 | 0.203 |
| IFNg_GMCSF1 | -0.355 | 0.698 |
| Rv1432_day32 | -0.138 | 0.327 |
| Rv1565c_day32 | -0.218 | -0.15 |
| secA2_input | -0.801 | -0.465 |
| delta_Rv3594 | 1.883 | 1.862 |
| delta_Rv3717 | 0.785 | 1.436 |
| delta_Rv3811 | 0.639 | 0.895 |
| delta_Rv0954 | 1.441 | 1.454 |
| PonA1 | 1.277 | 0.628 |
| EccD1_KO | -2.654 | 0.204 |
| EspI_KO | -2.598 | -0.95 |
| PE35_KO | -1.187 | 0.204 |
| PPE68_KO | -1.763 | -0.819 |
| glycerol2 | 0.083 | 0.726 |
| lignocerate | 0.302 | 1.153 |
| oleate | 0.62 | -0.335 |
| phosphatidylcholine | 0.382 | 0.901 |
| acetate | 0.369 | 0.685 |
| glucAc | 0.762 | 1.107 |
| Rv0950ko | 2.05 | 0.416 |
| Rv1096ko | 1.764 | 0.522 |
| Rv3684ko | 0.982 | 0.511 |
| delta_otsA_trehalose | 0.941 | 0.772 |