Top 10 genes with highest correlation to Rv2622/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0104/- | (cc=0.5662) | info on Rv0104/- |
| Rv1971/mce3F | (cc=0.5174) | info on Rv1971/mce3F |
| Rv3072c/- | (cc=0.4889) | info on Rv3072c/- |
| Rv3711c/dnaQ | (cc=0.4761) | info on Rv3711c/dnaQ |
| Rv1900c/lipJ | (cc=0.4756) | info on Rv1900c/lipJ |
| Rv3703c/- | (cc=0.4695) | info on Rv3703c/- |
| Rv3086/adhD | (cc=0.4605) | info on Rv3086/adhD |
| Rv0254c/cobU | (cc=0.4515) | info on Rv0254c/cobU |
| Rv0588/yrbE2B | (cc=0.4473) | info on Rv0588/yrbE2B |
| Rv0387c/- | (cc=0.4433) | info on Rv0387c/- |
Correlation of Rv2622/- with Rv0588/yrbE2B
Normalized LFCs for Rv2622/-:
(description and provenance of datasets)
| Rv2622/- | Rv0588/yrbE2B | |
| Fe_supp_jason_reseq | -2.369 | -0.254 |
| low_pH_jason_reseq | -0.694 | -0.761 |
| NO_jason_reseq | -0.675 | -0.137 |
| B6_jason_reseq | -0.658 | -0.85 |
| MHCII_jason_reseq | -0.845 | -0.215 |
| Isoniazid02 | -1.765 | -1.806 |
| Rifampicin4 | -0.108 | -0.127 |
| Ethambutol3 | -0.582 | -1.677 |
| Meropenem3 | -1.55 | -1.681 |
| Vancomycin16 | -1.462 | -0.639 |
| Rv2680_day32 | -0.322 | 1.112 |
| H37Rv_KO_MarP | 0.15 | 0.102 |
| hypoxia_3wks | -0.311 | -0.399 |
| hypoxia_6wks | 0.522 | -0.209 |
| glycerol | 0.745 | -0.645 |
| cholesterol | 0.877 | -0.574 |
| AJ | -0.839 | 0.822 |
| Bibs02 | 0.535 | 0.894 |
| Bibs02c | -0.732 | -0.617 |
| BL6 | 1.405 | 0.894 |
| BL6a | -0.716 | 0.512 |
| BXD01 | -1.356 | 0.738 |
| BXD010 | -0.096 | 0.843 |
| BXD011 | 0.117 | 1.88 |
| BXD03 | -0.249 | -0.272 |
| BXD04 | -1.4 | 1.036 |
| BXD05 | -0.614 | 0.348 |
| BXD06 | -1.15 | 1.015 |
| BXD07 | -1.67 | 0.595 |
| BXD08 | -0.089 | 0.753 |
| BXD09 | -0.508 | 0.81 |
| CAST | -0.886 | 0.202 |
| CCcont | -1.206 | 0.73 |
| DS01 | -0.137 | -0.755 |
| DS02 | -1.914 | -0.748 |
| DS04 | -0.909 | 0.07 |
| DS0c | 0.278 | -0.165 |
| GP01 | 0.524 | 0.882 |
| GP02 | 0.02 | -0.047 |
| GP0c | 0.671 | 0.24 |
| NOD | -0.786 | -0.042 |
| NZO | 0.228 | 0.306 |
| PWK | 0.894 | -0.578 |
| H37Rv_KO_CtpC | -0.957 | 0.348 |
| H37Rv_KO_CtpD | 1.241 | 1.415 |
| H37Rv_KO_Rv1272 | 0.231 | 1.169 |
| H37Rv_KO_SugABC | -0.381 | 0.45 |
| H37Rv_KO_MbtN | -0.293 | -0.656 |
| Trans05 | -0.58 | 0.093 |
| macrophage_unactivated | -1.761 | -0.057 |
| IL1 | -1.258 | 0.05 |
| Rapamycin | -0.439 | -0.055 |
| Tcell | -0.616 | 0.541 |
| GMCSF | -2.044 | 0.396 |
| IFNab | -0.082 | 0.051 |
| IFNg | -1.438 | 0.315 |
| IFNg_GMCSF1 | -0.355 | -0.654 |
| Rv1432_day32 | -0.138 | 0.169 |
| Rv1565c_day32 | -0.218 | 0.621 |
| secA2_input | -0.801 | 0.25 |
| delta_Rv3594 | 1.883 | 0.132 |
| delta_Rv3717 | 0.785 | 0.541 |
| delta_Rv3811 | 0.639 | 0.913 |
| delta_Rv0954 | 1.441 | 0.842 |
| PonA1 | 1.277 | 0.546 |
| EccD1_KO | -2.654 | -0.635 |
| EspI_KO | -2.598 | -0.927 |
| PE35_KO | -1.187 | -2.042 |
| PPE68_KO | -1.763 | -1.699 |
| glycerol2 | 0.083 | -0.029 |
| lignocerate | 0.302 | 0.421 |
| oleate | 0.62 | 0.274 |
| phosphatidylcholine | 0.382 | 0.112 |
| acetate | 0.369 | 0.0 |
| glucAc | 0.762 | 0.042 |
| Rv0950ko | 2.05 | 1.984 |
| Rv1096ko | 1.764 | 2.844 |
| Rv3684ko | 0.982 | 1.503 |
| delta_otsA_trehalose | 0.941 | -0.55 |