Top 10 genes with highest correlation to Rv2601/speE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2125/- | (cc=0.6854) | info on Rv2125/- |
| Rv3093c/- | (cc=0.645) | info on Rv3093c/- |
| Rv2725c/hflX | (cc=0.631) | info on Rv2725c/hflX |
| Rv2917/- | (cc=0.605) | info on Rv2917/- |
| Rv1843c/guaB1 | (cc=0.5865) | info on Rv1843c/guaB1 |
| Rv0218/- | (cc=0.5798) | info on Rv0218/- |
| Rv3362c/- | (cc=0.5706) | info on Rv3362c/- |
| Rv2385/mbtJ | (cc=0.5671) | info on Rv2385/mbtJ |
| Rv3401/- | (cc=0.5655) | info on Rv3401/- |
| Rv3651/- | (cc=0.5576) | info on Rv3651/- |
Correlation of Rv2601/speE with Rv2385/mbtJ
Normalized LFCs for Rv2601/speE:
(description and provenance of datasets)
| Rv2601/speE | Rv2385/mbtJ | |
| Fe_supp_jason_reseq | -0.398 | -0.638 |
| low_pH_jason_reseq | -0.522 | 0.376 |
| NO_jason_reseq | 0.15 | -0.181 |
| B6_jason_reseq | 0.284 | 0.661 |
| MHCII_jason_reseq | 0.663 | 0.998 |
| Isoniazid02 | 0.384 | -0.127 |
| Rifampicin4 | 0.287 | -0.926 |
| Ethambutol3 | -0.243 | 0.981 |
| Meropenem3 | -0.472 | -0.639 |
| Vancomycin16 | 0.037 | -0.523 |
| Rv2680_day32 | 0.286 | 0.477 |
| H37Rv_KO_MarP | -0.097 | 0.016 |
| hypoxia_3wks | 0.163 | 0.04 |
| hypoxia_6wks | -0.633 | -0.102 |
| glycerol | 0.844 | 0.351 |
| cholesterol | 0.196 | 0.456 |
| AJ | 0.521 | 0.025 |
| Bibs02 | 0.139 | 0.049 |
| Bibs02c | 0.009 | 0.132 |
| BL6 | -1.057 | -1.463 |
| BL6a | -0.201 | 0.0 |
| BXD01 | -1.101 | -0.625 |
| BXD010 | -0.962 | -0.777 |
| BXD011 | -1.09 | -0.785 |
| BXD03 | -0.239 | -0.205 |
| BXD04 | -0.753 | -0.636 |
| BXD05 | -0.64 | -0.238 |
| BXD06 | -0.855 | -0.698 |
| BXD07 | -0.799 | -0.077 |
| BXD08 | -0.66 | -0.417 |
| BXD09 | -0.486 | -0.503 |
| CAST | 0.137 | 0.744 |
| CCcont | -1.219 | -1.605 |
| DS01 | 0.303 | 0.113 |
| DS02 | 0.449 | 0.126 |
| DS04 | 0.587 | -0.153 |
| DS0c | 0.057 | 0.666 |
| GP01 | 0.293 | -0.732 |
| GP02 | 0.33 | 0.5 |
| GP0c | -0.32 | -0.612 |
| NOD | 0.851 | 0.823 |
| NZO | -0.394 | 0.0 |
| PWK | 0.051 | -0.236 |
| H37Rv_KO_CtpC | -0.237 | -0.986 |
| H37Rv_KO_CtpD | 0.044 | 0.464 |
| H37Rv_KO_Rv1272 | -0.71 | 0.11 |
| H37Rv_KO_SugABC | 0.0 | 0.027 |
| H37Rv_KO_MbtN | -0.603 | 0.044 |
| Trans05 | -0.468 | 0.464 |
| macrophage_unactivated | 0.0 | -0.751 |
| IL1 | -0.311 | 0.326 |
| Rapamycin | -0.641 | -0.399 |
| Tcell | -0.955 | -0.74 |
| GMCSF | 0.409 | 0.1 |
| IFNab | -0.447 | -0.967 |
| IFNg | -0.235 | -0.155 |
| IFNg_GMCSF1 | 0.217 | -0.06 |
| Rv1432_day32 | -0.061 | 0.087 |
| Rv1565c_day32 | 0.608 | 1.602 |
| secA2_input | -0.131 | 0.219 |
| delta_Rv3594 | 0.408 | 0.662 |
| delta_Rv3717 | 0.424 | 0.293 |
| delta_Rv3811 | 0.192 | 0.189 |
| delta_Rv0954 | 0.907 | 0.016 |
| PonA1 | 0.793 | 0.971 |
| EccD1_KO | 0.082 | -0.543 |
| EspI_KO | 0.394 | 0.174 |
| PE35_KO | 0.073 | 0.061 |
| PPE68_KO | -0.4 | -0.099 |
| glycerol2 | -0.708 | 0.088 |
| lignocerate | -0.675 | -0.532 |
| oleate | -0.457 | 0.692 |
| phosphatidylcholine | -0.346 | 0.396 |
| acetate | -0.76 | -1.009 |
| glucAc | -0.898 | -1.034 |
| Rv0950ko | -0.332 | 0.7 |
| Rv1096ko | -0.416 | 0.76 |
| Rv3684ko | -0.989 | -0.269 |
| delta_otsA_trehalose | -0.097 | 0.322 |