Top 10 genes with highest correlation to Rv2601/speE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2125/- | (cc=0.6854) | info on Rv2125/- |
| Rv3093c/- | (cc=0.645) | info on Rv3093c/- |
| Rv2725c/hflX | (cc=0.631) | info on Rv2725c/hflX |
| Rv2917/- | (cc=0.605) | info on Rv2917/- |
| Rv1843c/guaB1 | (cc=0.5865) | info on Rv1843c/guaB1 |
| Rv0218/- | (cc=0.5798) | info on Rv0218/- |
| Rv3362c/- | (cc=0.5706) | info on Rv3362c/- |
| Rv2385/mbtJ | (cc=0.5671) | info on Rv2385/mbtJ |
| Rv3401/- | (cc=0.5655) | info on Rv3401/- |
| Rv3651/- | (cc=0.5576) | info on Rv3651/- |
Correlation of Rv2601/speE with Rv2125/-
Normalized LFCs for Rv2601/speE:
(description and provenance of datasets)
| Rv2601/speE | Rv2125/- | |
| Fe_supp_jason_reseq | -0.398 | 0.845 |
| low_pH_jason_reseq | -0.522 | -0.231 |
| NO_jason_reseq | 0.15 | -0.11 |
| B6_jason_reseq | 0.284 | 0.428 |
| MHCII_jason_reseq | 0.663 | 0.874 |
| Isoniazid02 | 0.384 | 1.013 |
| Rifampicin4 | 0.287 | -0.171 |
| Ethambutol3 | -0.243 | 0.06 |
| Meropenem3 | -0.472 | 0.159 |
| Vancomycin16 | 0.037 | -0.106 |
| Rv2680_day32 | 0.286 | -0.055 |
| H37Rv_KO_MarP | -0.097 | 0.876 |
| hypoxia_3wks | 0.163 | 0.0 |
| hypoxia_6wks | -0.633 | -0.299 |
| glycerol | 0.844 | 1.122 |
| cholesterol | 0.196 | 0.722 |
| AJ | 0.521 | 0.368 |
| Bibs02 | 0.139 | -0.371 |
| Bibs02c | 0.009 | 0.394 |
| BL6 | -1.057 | -1.865 |
| BL6a | -0.201 | -0.342 |
| BXD01 | -1.101 | -1.648 |
| BXD010 | -0.962 | -1.35 |
| BXD011 | -1.09 | -1.534 |
| BXD03 | -0.239 | -1.12 |
| BXD04 | -0.753 | -1.647 |
| BXD05 | -0.64 | -0.946 |
| BXD06 | -0.855 | -1.222 |
| BXD07 | -0.799 | -1.3 |
| BXD08 | -0.66 | -1.139 |
| BXD09 | -0.486 | -1.068 |
| CAST | 0.137 | -0.661 |
| CCcont | -1.219 | -1.205 |
| DS01 | 0.303 | 0.022 |
| DS02 | 0.449 | -0.391 |
| DS04 | 0.587 | 0.475 |
| DS0c | 0.057 | -0.035 |
| GP01 | 0.293 | 0.67 |
| GP02 | 0.33 | 0.046 |
| GP0c | -0.32 | 0.522 |
| NOD | 0.851 | 0.145 |
| NZO | -0.394 | -0.539 |
| PWK | 0.051 | -0.826 |
| H37Rv_KO_CtpC | -0.237 | -1.043 |
| H37Rv_KO_CtpD | 0.044 | -1.512 |
| H37Rv_KO_Rv1272 | -0.71 | -1.109 |
| H37Rv_KO_SugABC | 0.0 | 0.948 |
| H37Rv_KO_MbtN | -0.603 | 0.311 |
| Trans05 | -0.468 | -1.4 |
| macrophage_unactivated | 0.0 | 0.249 |
| IL1 | -0.311 | -0.024 |
| Rapamycin | -0.641 | 0.43 |
| Tcell | -0.955 | -0.971 |
| GMCSF | 0.409 | 0.042 |
| IFNab | -0.447 | 0.239 |
| IFNg | -0.235 | -0.224 |
| IFNg_GMCSF1 | 0.217 | 0.575 |
| Rv1432_day32 | -0.061 | 0.095 |
| Rv1565c_day32 | 0.608 | 0.485 |
| secA2_input | -0.131 | 0.106 |
| delta_Rv3594 | 0.408 | 0.965 |
| delta_Rv3717 | 0.424 | 1.072 |
| delta_Rv3811 | 0.192 | 1.184 |
| delta_Rv0954 | 0.907 | 1.26 |
| PonA1 | 0.793 | 0.965 |
| EccD1_KO | 0.082 | 0.562 |
| EspI_KO | 0.394 | 0.502 |
| PE35_KO | 0.073 | 0.16 |
| PPE68_KO | -0.4 | 0.474 |
| glycerol2 | -0.708 | -1.033 |
| lignocerate | -0.675 | -0.669 |
| oleate | -0.457 | -0.88 |
| phosphatidylcholine | -0.346 | -0.819 |
| acetate | -0.76 | 0.318 |
| glucAc | -0.898 | 0.0 |
| Rv0950ko | -0.332 | -0.151 |
| Rv1096ko | -0.416 | 0.106 |
| Rv3684ko | -0.989 | -0.747 |
| delta_otsA_trehalose | -0.097 | 0.132 |