Top 10 genes with highest correlation to Rv2549c/vapC20:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2678c/hemE | (cc=0.5222) | info on Rv2678c/hemE |
| Rv0541c/- | (cc=0.4615) | info on Rv0541c/- |
| Rv3489/- | (cc=0.4579) | info on Rv3489/- |
| Rv0092/ctpA | (cc=0.4559) | info on Rv0092/ctpA |
| Rv0918/- | (cc=0.4515) | info on Rv0918/- |
| Rv2229c/- | (cc=0.4439) | info on Rv2229c/- |
| Rv3858c/gltD | (cc=0.4326) | info on Rv3858c/gltD |
| Rv1035c/- | (cc=0.4271) | info on Rv1035c/- |
| Rv2036/- | (cc=0.4184) | info on Rv2036/- |
| Rv3807c/- | (cc=0.4174) | info on Rv3807c/- |
Correlation of Rv2549c/vapC20 with Rv2229c/-
Normalized LFCs for Rv2549c/vapC20:
(description and provenance of datasets)
| Rv2549c/vapC20 | Rv2229c/- | |
| Fe_supp_jason_reseq | 0.611 | 0.898 |
| low_pH_jason_reseq | 0.017 | 2.197 |
| NO_jason_reseq | 0.026 | 0.0 |
| B6_jason_reseq | 0.279 | -1.811 |
| MHCII_jason_reseq | 0.577 | -1.595 |
| Isoniazid02 | -0.451 | -0.634 |
| Rifampicin4 | 0.699 | 1.527 |
| Ethambutol3 | -0.247 | 0.686 |
| Meropenem3 | -0.238 | -0.424 |
| Vancomycin16 | 0.186 | 0.753 |
| Rv2680_day32 | 1.401 | 1.287 |
| H37Rv_KO_MarP | 0.356 | -1.071 |
| hypoxia_3wks | -0.323 | 0.0 |
| hypoxia_6wks | 0.608 | 0.0 |
| glycerol | 0.041 | -0.554 |
| cholesterol | -0.042 | -0.398 |
| AJ | -0.387 | -0.637 |
| Bibs02 | 0.6 | 0.621 |
| Bibs02c | -0.724 | -0.365 |
| BL6 | -1.04 | -0.343 |
| BL6a | -0.422 | -0.544 |
| BXD01 | -0.632 | -0.358 |
| BXD010 | 0.148 | -0.352 |
| BXD011 | 0.148 | -0.35 |
| BXD03 | 0.085 | -0.371 |
| BXD04 | -0.437 | -0.34 |
| BXD05 | -0.2 | -0.235 |
| BXD06 | -0.409 | -0.366 |
| BXD07 | -0.21 | -0.38 |
| BXD08 | -0.422 | -0.365 |
| BXD09 | -0.004 | -0.386 |
| CAST | -0.491 | -0.632 |
| CCcont | -1.321 | -0.41 |
| DS01 | -0.106 | -0.648 |
| DS02 | 0.432 | -0.597 |
| DS04 | 0.398 | 1.244 |
| DS0c | 0.272 | -0.596 |
| GP01 | -1.116 | -0.271 |
| GP02 | 0.526 | -0.228 |
| GP0c | -0.349 | -0.357 |
| NOD | 0.103 | 1.235 |
| NZO | -0.01 | -0.548 |
| PWK | -0.01 | -0.539 |
| H37Rv_KO_CtpC | 0.134 | -0.446 |
| H37Rv_KO_CtpD | 0.254 | -0.348 |
| H37Rv_KO_Rv1272 | 0.372 | -0.387 |
| H37Rv_KO_SugABC | -0.156 | -0.173 |
| H37Rv_KO_MbtN | 1.087 | 0.827 |
| Trans05 | 0.03 | -0.359 |
| macrophage_unactivated | -0.713 | 0.0 |
| IL1 | -0.605 | 0.0 |
| Rapamycin | -0.239 | 0.0 |
| Tcell | -0.352 | 0.0 |
| GMCSF | 0.277 | 0.0 |
| IFNab | 0.112 | 0.0 |
| IFNg | -0.115 | 0.0 |
| IFNg_GMCSF1 | 0.33 | 0.0 |
| Rv1432_day32 | 0.282 | 0.0 |
| Rv1565c_day32 | 0.1 | -0.924 |
| secA2_input | -1.126 | 0.87 |
| delta_Rv3594 | 0.6 | 3.374 |
| delta_Rv3717 | 0.988 | -0.303 |
| delta_Rv3811 | 0.958 | 2.357 |
| delta_Rv0954 | 0.05 | -0.49 |
| PonA1 | -0.772 | 0.0 |
| EccD1_KO | -1.467 | -3.167 |
| EspI_KO | -0.559 | 0.767 |
| PE35_KO | -0.992 | -2.409 |
| PPE68_KO | -1.952 | -1.872 |
| glycerol2 | -0.363 | 0.0 |
| lignocerate | -0.14 | 0.0 |
| oleate | -0.512 | 0.0 |
| phosphatidylcholine | -0.186 | 0.0 |
| acetate | -0.113 | 0.0 |
| glucAc | -0.727 | 0.0 |
| Rv0950ko | 0.495 | 0.832 |
| Rv1096ko | 0.796 | 2.268 |
| Rv3684ko | -0.796 | 2.312 |
| delta_otsA_trehalose | 1.234 | 1.661 |