Top 10 genes with highest correlation to Rv2549c/vapC20:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2678c/hemE | (cc=0.5222) | info on Rv2678c/hemE |
| Rv0541c/- | (cc=0.4615) | info on Rv0541c/- |
| Rv3489/- | (cc=0.4579) | info on Rv3489/- |
| Rv0092/ctpA | (cc=0.4559) | info on Rv0092/ctpA |
| Rv0918/- | (cc=0.4515) | info on Rv0918/- |
| Rv2229c/- | (cc=0.4439) | info on Rv2229c/- |
| Rv3858c/gltD | (cc=0.4326) | info on Rv3858c/gltD |
| Rv1035c/- | (cc=0.4271) | info on Rv1035c/- |
| Rv2036/- | (cc=0.4184) | info on Rv2036/- |
| Rv3807c/- | (cc=0.4174) | info on Rv3807c/- |
Correlation of Rv2549c/vapC20 with Rv2036/-
Normalized LFCs for Rv2549c/vapC20:
(description and provenance of datasets)
| Rv2549c/vapC20 | Rv2036/- | |
| Fe_supp_jason_reseq | 0.611 | -0.549 |
| low_pH_jason_reseq | 0.017 | -0.179 |
| NO_jason_reseq | 0.026 | -0.914 |
| B6_jason_reseq | 0.279 | 0.759 |
| MHCII_jason_reseq | 0.577 | 0.789 |
| Isoniazid02 | -0.451 | -0.627 |
| Rifampicin4 | 0.699 | 1.186 |
| Ethambutol3 | -0.247 | -0.343 |
| Meropenem3 | -0.238 | 0.159 |
| Vancomycin16 | 0.186 | 0.297 |
| Rv2680_day32 | 1.401 | -1.564 |
| H37Rv_KO_MarP | 0.356 | -0.157 |
| hypoxia_3wks | -0.323 | 0.0 |
| hypoxia_6wks | 0.608 | 0.0 |
| glycerol | 0.041 | -2.266 |
| cholesterol | -0.042 | -1.742 |
| AJ | -0.387 | 0.595 |
| Bibs02 | 0.6 | 1.636 |
| Bibs02c | -0.724 | -3.116 |
| BL6 | -1.04 | -2.702 |
| BL6a | -0.422 | -2.646 |
| BXD01 | -0.632 | -2.091 |
| BXD010 | 0.148 | -1.21 |
| BXD011 | 0.148 | -2.212 |
| BXD03 | 0.085 | -2.663 |
| BXD04 | -0.437 | -1.168 |
| BXD05 | -0.2 | -0.484 |
| BXD06 | -0.409 | -1.783 |
| BXD07 | -0.21 | -1.021 |
| BXD08 | -0.422 | -2.22 |
| BXD09 | -0.004 | -1.877 |
| CAST | -0.491 | -1.408 |
| CCcont | -1.321 | -2.593 |
| DS01 | -0.106 | -0.298 |
| DS02 | 0.432 | 0.057 |
| DS04 | 0.398 | -2.999 |
| DS0c | 0.272 | -0.148 |
| GP01 | -1.116 | -1.229 |
| GP02 | 0.526 | -1.797 |
| GP0c | -0.349 | -1.936 |
| NOD | 0.103 | -0.283 |
| NZO | -0.01 | -0.406 |
| PWK | -0.01 | -0.705 |
| H37Rv_KO_CtpC | 0.134 | -1.113 |
| H37Rv_KO_CtpD | 0.254 | -2.29 |
| H37Rv_KO_Rv1272 | 0.372 | -0.765 |
| H37Rv_KO_SugABC | -0.156 | -1.791 |
| H37Rv_KO_MbtN | 1.087 | 0.601 |
| Trans05 | 0.03 | -0.422 |
| macrophage_unactivated | -0.713 | -1.708 |
| IL1 | -0.605 | -2.231 |
| Rapamycin | -0.239 | -3.069 |
| Tcell | -0.352 | -1.551 |
| GMCSF | 0.277 | -0.51 |
| IFNab | 0.112 | -0.907 |
| IFNg | -0.115 | -1.109 |
| IFNg_GMCSF1 | 0.33 | -0.77 |
| Rv1432_day32 | 0.282 | -0.43 |
| Rv1565c_day32 | 0.1 | 0.0 |
| secA2_input | -1.126 | -1.498 |
| delta_Rv3594 | 0.6 | 2.839 |
| delta_Rv3717 | 0.988 | 2.382 |
| delta_Rv3811 | 0.958 | 2.552 |
| delta_Rv0954 | 0.05 | 0.249 |
| PonA1 | -0.772 | -1.235 |
| EccD1_KO | -1.467 | -1.033 |
| EspI_KO | -0.559 | -0.787 |
| PE35_KO | -0.992 | -0.093 |
| PPE68_KO | -1.952 | -0.419 |
| glycerol2 | -0.363 | -0.95 |
| lignocerate | -0.14 | -0.826 |
| oleate | -0.512 | -0.767 |
| phosphatidylcholine | -0.186 | -0.758 |
| acetate | -0.113 | -0.499 |
| glucAc | -0.727 | 0.333 |
| Rv0950ko | 0.495 | 0.0 |
| Rv1096ko | 0.796 | -1.855 |
| Rv3684ko | -0.796 | -1.588 |
| delta_otsA_trehalose | 1.234 | 0.208 |