Top 10 genes with highest correlation to Rv2431c/PE25:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0989c/grcC2 | (cc=0.625) | info on Rv0989c/grcC2 |
| Rv1504c/- | (cc=0.5577) | info on Rv1504c/- |
| Rv0073/- | (cc=0.5486) | info on Rv0073/- |
| Rv0832/PE_PGRS12 | (cc=0.5339) | info on Rv0832/PE_PGRS12 |
| Rv0456B/mazE1 | (cc=0.5265) | info on Rv0456B/mazE1 |
| Rv0820/phoT | (cc=0.526) | info on Rv0820/phoT |
| Rv2352c/PPE38 | (cc=0.5239) | info on Rv2352c/PPE38 |
| Rv2268c/cyp128 | (cc=0.5114) | info on Rv2268c/cyp128 |
| Rv3679/- | (cc=0.5094) | info on Rv3679/- |
| Rv3261/fbiA | (cc=0.5055) | info on Rv3261/fbiA |
Correlation of Rv2431c/PE25 with Rv0832/PE_PGRS12
Normalized LFCs for Rv2431c/PE25:
(description and provenance of datasets)
| Rv2431c/PE25 | Rv0832/PE_PGRS12 | |
| Fe_supp_jason_reseq | 0.619 | 0.893 |
| low_pH_jason_reseq | 0.522 | 0.157 |
| NO_jason_reseq | -0.914 | 0.588 |
| B6_jason_reseq | -0.36 | -0.283 |
| MHCII_jason_reseq | -0.217 | 0.969 |
| Isoniazid02 | -0.931 | -0.423 |
| Rifampicin4 | -1.6 | 0.726 |
| Ethambutol3 | -1.563 | -0.694 |
| Meropenem3 | -1.653 | -0.854 |
| Vancomycin16 | -0.921 | -0.432 |
| Rv2680_day32 | -0.087 | -0.461 |
| H37Rv_KO_MarP | -0.447 | 0.196 |
| hypoxia_3wks | 0.582 | 0.283 |
| hypoxia_6wks | 0.0 | -0.522 |
| glycerol | 3.461 | 1.454 |
| cholesterol | 6.0 | 4.229 |
| AJ | 1.303 | 0.899 |
| Bibs02 | 1.457 | 0.523 |
| Bibs02c | 1.199 | 1.805 |
| BL6 | 1.457 | 0.217 |
| BL6a | 2.072 | 1.834 |
| BXD01 | 0.827 | 1.022 |
| BXD010 | 0.551 | -0.01 |
| BXD011 | 2.085 | 0.38 |
| BXD03 | 1.534 | 0.887 |
| BXD04 | 1.689 | 0.662 |
| BXD05 | 2.296 | 1.347 |
| BXD06 | 1.937 | 0.044 |
| BXD07 | 2.139 | -0.222 |
| BXD08 | 1.605 | 1.001 |
| BXD09 | 2.05 | 0.101 |
| CAST | -0.192 | 1.697 |
| CCcont | 1.232 | 1.148 |
| DS01 | 3.744 | 1.083 |
| DS02 | 3.294 | 0.608 |
| DS04 | 3.536 | 2.819 |
| DS0c | 2.665 | 1.994 |
| GP01 | 0.531 | 0.04 |
| GP02 | 0.806 | 1.222 |
| GP0c | 1.557 | 0.093 |
| NOD | 1.523 | 0.037 |
| NZO | 0.962 | 0.795 |
| PWK | 2.947 | 1.08 |
| H37Rv_KO_CtpC | 1.81 | 1.487 |
| H37Rv_KO_CtpD | 1.079 | 1.763 |
| H37Rv_KO_Rv1272 | 2.011 | 1.149 |
| H37Rv_KO_SugABC | 1.484 | 0.676 |
| H37Rv_KO_MbtN | 0.09 | 0.462 |
| Trans05 | 2.411 | 0.835 |
| macrophage_unactivated | 0.211 | 0.947 |
| IL1 | 0.561 | -0.795 |
| Rapamycin | 0.233 | -0.083 |
| Tcell | 0.72 | -0.345 |
| GMCSF | -0.304 | 0.359 |
| IFNab | 0.668 | 0.082 |
| IFNg | 0.786 | -0.11 |
| IFNg_GMCSF1 | 0.852 | -0.355 |
| Rv1432_day32 | 0.439 | 0.256 |
| Rv1565c_day32 | 5.482 | -0.82 |
| secA2_input | -1.575 | 0.512 |
| delta_Rv3594 | 0.425 | -0.315 |
| delta_Rv3717 | 0.174 | -0.042 |
| delta_Rv3811 | 0.013 | -0.251 |
| delta_Rv0954 | 1.122 | -1.299 |
| PonA1 | 0.196 | 0.013 |
| EccD1_KO | -0.72 | -0.437 |
| EspI_KO | -0.148 | -0.662 |
| PE35_KO | 0.639 | -0.928 |
| PPE68_KO | 0.64 | -0.877 |
| glycerol2 | -0.013 | 0.552 |
| lignocerate | -0.468 | -0.134 |
| oleate | 0.801 | 1.266 |
| phosphatidylcholine | 0.162 | 0.59 |
| acetate | -0.753 | -0.851 |
| glucAc | -0.664 | -1.108 |
| Rv0950ko | 0.084 | -0.229 |
| Rv1096ko | -1.197 | -0.196 |
| Rv3684ko | -0.177 | -0.855 |
| delta_otsA_trehalose | 0.513 | -0.195 |