Top 10 genes with highest correlation to Rv2401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2169c/- | (cc=0.528) | info on Rv2169c/- |
| Rv3193c/- | (cc=0.5168) | info on Rv3193c/- |
| Rv2346c/esxO | (cc=0.5109) | info on Rv2346c/esxO |
| Rv1578c/- | (cc=0.4973) | info on Rv1578c/- |
| Rv3696c/glpK | (cc=0.4951) | info on Rv3696c/glpK |
| Rv2709/- | (cc=0.4758) | info on Rv2709/- |
| Rv0011c/- | (cc=0.4738) | info on Rv0011c/- |
| Rv0598c/vapC27 | (cc=0.4705) | info on Rv0598c/vapC27 |
| Rv2793c/truB | (cc=0.4598) | info on Rv2793c/truB |
| Rv2228c/- | (cc=0.4534) | info on Rv2228c/- |
Correlation of Rv2401/- with Rv3696c/glpK
Normalized LFCs for Rv2401/-:
(description and provenance of datasets)
| Rv2401/- | Rv3696c/glpK | |
| Fe_supp_jason_reseq | 1.001 | 1.778 |
| low_pH_jason_reseq | 1.261 | 6.0 |
| NO_jason_reseq | 2.079 | 6.0 |
| B6_jason_reseq | 2.108 | 6.0 |
| MHCII_jason_reseq | -2.11 | 1.383 |
| Isoniazid02 | -0.258 | -1.455 |
| Rifampicin4 | -0.742 | -1.995 |
| Ethambutol3 | -0.597 | 1.233 |
| Meropenem3 | -0.588 | -0.771 |
| Vancomycin16 | -0.554 | -1.366 |
| Rv2680_day32 | 0.995 | 2.647 |
| H37Rv_KO_MarP | 0.267 | 0.244 |
| hypoxia_3wks | -0.486 | 1.75 |
| hypoxia_6wks | 2.397 | 6.0 |
| glycerol | 0.341 | -5.227 |
| cholesterol | 0.454 | -0.639 |
| AJ | 0.392 | 4.528 |
| Bibs02 | 0.677 | -0.332 |
| Bibs02c | -0.355 | 0.089 |
| BL6 | -0.723 | -1.033 |
| BL6a | 0.29 | 0.664 |
| BXD01 | -0.347 | 1.68 |
| BXD010 | 0.543 | 1.312 |
| BXD011 | 0.583 | 2.299 |
| BXD03 | -0.229 | -0.426 |
| BXD04 | 0.627 | 0.835 |
| BXD05 | -0.405 | 0.526 |
| BXD06 | 0.068 | 2.16 |
| BXD07 | 1.803 | 1.097 |
| BXD08 | -0.225 | 0.628 |
| BXD09 | 1.39 | 1.682 |
| CAST | 1.952 | 5.014 |
| CCcont | 0.149 | -1.866 |
| DS01 | 2.452 | 0.161 |
| DS02 | 3.341 | 0.402 |
| DS04 | 0.645 | 1.456 |
| DS0c | 2.528 | -2.154 |
| GP01 | -1.012 | -2.071 |
| GP02 | 0.0 | -1.551 |
| GP0c | 0.357 | -2.908 |
| NOD | 0.059 | 2.301 |
| NZO | 0.423 | 4.859 |
| PWK | 1.368 | 6.0 |
| H37Rv_KO_CtpC | 0.082 | 0.534 |
| H37Rv_KO_CtpD | 1.059 | 2.55 |
| H37Rv_KO_Rv1272 | -0.95 | -1.936 |
| H37Rv_KO_SugABC | 0.385 | -0.424 |
| H37Rv_KO_MbtN | -0.921 | -0.166 |
| Trans05 | -1.434 | -0.63 |
| macrophage_unactivated | -1.228 | -1.607 |
| IL1 | 0.077 | -1.041 |
| Rapamycin | 0.236 | -1.234 |
| Tcell | 0.857 | 0.596 |
| GMCSF | -0.85 | -2.54 |
| IFNab | -0.417 | -1.061 |
| IFNg | 0.644 | -0.81 |
| IFNg_GMCSF1 | -3.224 | 1.273 |
| Rv1432_day32 | 1.352 | 0.343 |
| Rv1565c_day32 | 0.736 | -0.924 |
| secA2_input | 0.099 | -0.945 |
| delta_Rv3594 | -1.479 | -2.6 |
| delta_Rv3717 | -2.246 | -1.286 |
| delta_Rv3811 | -1.862 | -2.051 |
| delta_Rv0954 | -2.076 | -1.101 |
| PonA1 | -0.091 | 1.358 |
| EccD1_KO | 0.901 | 0.0 |
| EspI_KO | -0.097 | -0.265 |
| PE35_KO | 2.818 | 1.339 |
| PPE68_KO | 2.048 | 0.793 |
| glycerol2 | -2.474 | -2.844 |
| lignocerate | -1.689 | -1.967 |
| oleate | -2.504 | -2.165 |
| phosphatidylcholine | -2.473 | -2.139 |
| acetate | -0.465 | -1.519 |
| glucAc | -0.187 | -1.194 |
| Rv0950ko | -1.517 | -0.874 |
| Rv1096ko | -1.034 | -0.875 |
| Rv3684ko | -3.331 | -0.609 |
| delta_otsA_trehalose | -0.864 | -0.103 |