Top 10 genes with highest correlation to Rv2401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2169c/- | (cc=0.528) | info on Rv2169c/- |
| Rv3193c/- | (cc=0.5168) | info on Rv3193c/- |
| Rv2346c/esxO | (cc=0.5109) | info on Rv2346c/esxO |
| Rv1578c/- | (cc=0.4973) | info on Rv1578c/- |
| Rv3696c/glpK | (cc=0.4951) | info on Rv3696c/glpK |
| Rv2709/- | (cc=0.4758) | info on Rv2709/- |
| Rv0011c/- | (cc=0.4738) | info on Rv0011c/- |
| Rv0598c/vapC27 | (cc=0.4705) | info on Rv0598c/vapC27 |
| Rv2793c/truB | (cc=0.4598) | info on Rv2793c/truB |
| Rv2228c/- | (cc=0.4534) | info on Rv2228c/- |
Correlation of Rv2401/- with Rv2169c/-
Normalized LFCs for Rv2401/-:
(description and provenance of datasets)
| Rv2401/- | Rv2169c/- | |
| Fe_supp_jason_reseq | 1.001 | 0.923 |
| low_pH_jason_reseq | 1.261 | 0.0 |
| NO_jason_reseq | 2.079 | 0.0 |
| B6_jason_reseq | 2.108 | 0.0 |
| MHCII_jason_reseq | -2.11 | 0.135 |
| Isoniazid02 | -0.258 | -0.796 |
| Rifampicin4 | -0.742 | -2.134 |
| Ethambutol3 | -0.597 | -0.958 |
| Meropenem3 | -0.588 | -1.109 |
| Vancomycin16 | -0.554 | -2.457 |
| Rv2680_day32 | 0.995 | 0.0 |
| H37Rv_KO_MarP | 0.267 | -0.288 |
| hypoxia_3wks | -0.486 | -0.502 |
| hypoxia_6wks | 2.397 | -0.549 |
| glycerol | 0.341 | 0.0 |
| cholesterol | 0.454 | 0.0 |
| AJ | 0.392 | 0.0 |
| Bibs02 | 0.677 | 0.0 |
| Bibs02c | -0.355 | 0.0 |
| BL6 | -0.723 | 0.0 |
| BL6a | 0.29 | 0.0 |
| BXD01 | -0.347 | 0.358 |
| BXD010 | 0.543 | 0.0 |
| BXD011 | 0.583 | 0.0 |
| BXD03 | -0.229 | 0.0 |
| BXD04 | 0.627 | 0.0 |
| BXD05 | -0.405 | 0.0 |
| BXD06 | 0.068 | 0.0 |
| BXD07 | 1.803 | 0.138 |
| BXD08 | -0.225 | 0.0 |
| BXD09 | 1.39 | 0.14 |
| CAST | 1.952 | 0.0 |
| CCcont | 0.149 | 0.149 |
| DS01 | 2.452 | 0.236 |
| DS02 | 3.341 | 0.0 |
| DS04 | 0.645 | 0.0 |
| DS0c | 2.528 | 0.217 |
| GP01 | -1.012 | 0.0 |
| GP02 | 0.0 | 0.0 |
| GP0c | 0.357 | 0.0 |
| NOD | 0.059 | 0.225 |
| NZO | 0.423 | 0.0 |
| PWK | 1.368 | 0.0 |
| H37Rv_KO_CtpC | 0.082 | 0.0 |
| H37Rv_KO_CtpD | 1.059 | 0.0 |
| H37Rv_KO_Rv1272 | -0.95 | 0.0 |
| H37Rv_KO_SugABC | 0.385 | 0.0 |
| H37Rv_KO_MbtN | -0.921 | 0.0 |
| Trans05 | -1.434 | 0.0 |
| macrophage_unactivated | -1.228 | 0.0 |
| IL1 | 0.077 | 0.0 |
| Rapamycin | 0.236 | 0.0 |
| Tcell | 0.857 | 0.45 |
| GMCSF | -0.85 | 0.0 |
| IFNab | -0.417 | 0.795 |
| IFNg | 0.644 | 0.0 |
| IFNg_GMCSF1 | -3.224 | 0.0 |
| Rv1432_day32 | 1.352 | 0.0 |
| Rv1565c_day32 | 0.736 | 0.0 |
| secA2_input | 0.099 | -1.832 |
| delta_Rv3594 | -1.479 | 0.119 |
| delta_Rv3717 | -2.246 | -1.067 |
| delta_Rv3811 | -1.862 | -0.122 |
| delta_Rv0954 | -2.076 | -1.096 |
| PonA1 | -0.091 | 0.0 |
| EccD1_KO | 0.901 | 0.454 |
| EspI_KO | -0.097 | 1.668 |
| PE35_KO | 2.818 | 3.856 |
| PPE68_KO | 2.048 | 3.2 |
| glycerol2 | -2.474 | -6.0 |
| lignocerate | -1.689 | -3.238 |
| oleate | -2.504 | -6.0 |
| phosphatidylcholine | -2.473 | -4.014 |
| acetate | -0.465 | -1.699 |
| glucAc | -0.187 | -2.833 |
| Rv0950ko | -1.517 | -1.701 |
| Rv1096ko | -1.034 | -2.31 |
| Rv3684ko | -3.331 | -0.75 |
| delta_otsA_trehalose | -0.864 | 0.27 |