Top 10 genes with highest correlation to Rv2358/smtB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0767c/- | (cc=0.5596) | info on Rv0767c/- |
| Rv1348/irtA | (cc=0.528) | info on Rv1348/irtA |
| Rv0450c/mmpL4 | (cc=0.5165) | info on Rv0450c/mmpL4 |
| Rv3586/- | (cc=0.4987) | info on Rv3586/- |
| Rv2904c/rplS | (cc=0.4717) | info on Rv2904c/rplS |
| Rv1539/lspA | (cc=0.4689) | info on Rv1539/lspA |
| Rv0190/- | (cc=0.4635) | info on Rv0190/- |
| Rv1089/PE10 | (cc=0.4598) | info on Rv1089/PE10 |
| Rv1957/- | (cc=0.4598) | info on Rv1957/- |
| Rv3482c/- | (cc=0.4594) | info on Rv3482c/- |
Correlation of Rv2358/smtB with Rv1348/irtA
Normalized LFCs for Rv2358/smtB:
(description and provenance of datasets)
| Rv2358/smtB | Rv1348/irtA | |
| Fe_supp_jason_reseq | 4.366 | 2.452 |
| low_pH_jason_reseq | -0.345 | 1.233 |
| NO_jason_reseq | 0.244 | -0.845 |
| B6_jason_reseq | 0.881 | -0.496 |
| MHCII_jason_reseq | 1.234 | -0.572 |
| Isoniazid02 | -1.033 | 0.156 |
| Rifampicin4 | -0.222 | 0.0 |
| Ethambutol3 | 1.063 | 0.0 |
| Meropenem3 | 1.174 | -0.138 |
| Vancomycin16 | 0.207 | -0.305 |
| Rv2680_day32 | -3.094 | -0.908 |
| H37Rv_KO_MarP | -0.715 | -1.123 |
| hypoxia_3wks | -0.295 | -0.502 |
| hypoxia_6wks | -0.672 | 0.0 |
| glycerol | 0.108 | -1.153 |
| cholesterol | -1.407 | -0.972 |
| AJ | -1.439 | -1.556 |
| Bibs02 | -0.8 | 0.446 |
| Bibs02c | 1.335 | -0.243 |
| BL6 | -1.745 | -0.839 |
| BL6a | 1.462 | -0.356 |
| BXD01 | -1.569 | -0.744 |
| BXD010 | -1.787 | -0.859 |
| BXD011 | -1.535 | -0.612 |
| BXD03 | -1.887 | -0.772 |
| BXD04 | -1.602 | -0.49 |
| BXD05 | -0.903 | -0.903 |
| BXD06 | -1.496 | -0.762 |
| BXD07 | -1.252 | -0.79 |
| BXD08 | -1.723 | -0.892 |
| BXD09 | -1.467 | -0.943 |
| CAST | -2.775 | -1.106 |
| CCcont | 0.837 | 0.49 |
| DS01 | -1.239 | 0.0 |
| DS02 | -1.827 | 0.435 |
| DS04 | -0.11 | -1.107 |
| DS0c | 0.383 | 0.53 |
| GP01 | -0.83 | -0.662 |
| GP02 | -1.078 | -0.558 |
| GP0c | 0.136 | -0.872 |
| NOD | -2.909 | -0.89 |
| NZO | -2.235 | -1.338 |
| PWK | -1.421 | -1.316 |
| H37Rv_KO_CtpC | -1.365 | -0.292 |
| H37Rv_KO_CtpD | -0.989 | -0.502 |
| H37Rv_KO_Rv1272 | -1.827 | -0.805 |
| H37Rv_KO_SugABC | 0.027 | -0.565 |
| H37Rv_KO_MbtN | 0.703 | -0.495 |
| Trans05 | -1.464 | -0.746 |
| macrophage_unactivated | -1.43 | -1.016 |
| IL1 | -2.076 | -0.297 |
| Rapamycin | -1.39 | -0.307 |
| Tcell | -1.004 | 0.0 |
| GMCSF | -2.944 | -1.545 |
| IFNab | -1.853 | -0.973 |
| IFNg | -0.644 | -1.195 |
| IFNg_GMCSF1 | -1.926 | -1.405 |
| Rv1432_day32 | -3.952 | -0.884 |
| Rv1565c_day32 | -0.794 | -0.351 |
| secA2_input | 2.339 | 0.0 |
| delta_Rv3594 | -1.557 | -0.967 |
| delta_Rv3717 | 0.237 | -1.881 |
| delta_Rv3811 | -1.808 | -1.557 |
| delta_Rv0954 | -0.173 | 0.226 |
| PonA1 | 0.816 | 0.621 |
| EccD1_KO | -1.648 | 0.474 |
| EspI_KO | -1.899 | 0.0 |
| PE35_KO | 0.828 | 1.779 |
| PPE68_KO | 0.384 | 0.883 |
| glycerol2 | 0.0 | -0.509 |
| lignocerate | 0.0 | -0.865 |
| oleate | 0.0 | -1.202 |
| phosphatidylcholine | 0.193 | -0.657 |
| acetate | 0.0 | 0.0 |
| glucAc | 0.0 | -0.176 |
| Rv0950ko | 0.476 | 0.609 |
| Rv1096ko | -0.347 | 0.416 |
| Rv3684ko | 0.0 | 0.452 |
| delta_otsA_trehalose | -0.597 | 0.294 |