Top 10 genes with highest correlation to Rv2318/uspC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1043c/- | (cc=0.4199) | info on Rv1043c/- |
| Rv3687c/rsfB | (cc=0.4172) | info on Rv3687c/rsfB |
| Rv0588/yrbE2B | (cc=0.4068) | info on Rv0588/yrbE2B |
| Rv2514c/- | (cc=0.4034) | info on Rv2514c/- |
| Rv2392/cysH | (cc=0.3962) | info on Rv2392/cysH |
| Rv0364/- | (cc=0.3846) | info on Rv0364/- |
| Rv0943c/- | (cc=0.3815) | info on Rv0943c/- |
| Rv3523/ltp3 | (cc=0.3781) | info on Rv3523/ltp3 |
| Rv0559c/- | (cc=0.3774) | info on Rv0559c/- |
| Rv1469/ctpD | (cc=0.3758) | info on Rv1469/ctpD |
Correlation of Rv2318/uspC with Rv3687c/rsfB
Normalized LFCs for Rv2318/uspC:
(description and provenance of datasets)
| Rv2318/uspC | Rv3687c/rsfB | |
| Fe_supp_jason_reseq | 1.013 | -1.493 |
| low_pH_jason_reseq | -0.452 | -1.865 |
| NO_jason_reseq | 0.352 | 0.108 |
| B6_jason_reseq | 0.527 | -2.159 |
| MHCII_jason_reseq | 0.193 | -3.167 |
| Isoniazid02 | 0.713 | -0.458 |
| Rifampicin4 | -0.712 | -1.584 |
| Ethambutol3 | 0.82 | -0.817 |
| Meropenem3 | 0.0 | 1.781 |
| Vancomycin16 | 0.743 | -0.653 |
| Rv2680_day32 | 0.38 | -0.725 |
| H37Rv_KO_MarP | -0.618 | 0.186 |
| hypoxia_3wks | 0.311 | 0.076 |
| hypoxia_6wks | -0.056 | -0.484 |
| glycerol | -0.432 | -2.023 |
| cholesterol | -0.057 | -1.451 |
| AJ | 0.296 | 0.267 |
| Bibs02 | 0.844 | -0.873 |
| Bibs02c | -0.447 | -2.004 |
| BL6 | 0.739 | -1.373 |
| BL6a | 0.624 | -0.462 |
| BXD01 | -0.051 | 1.247 |
| BXD010 | 1.385 | -0.385 |
| BXD011 | 2.132 | -0.022 |
| BXD03 | 1.526 | 0.069 |
| BXD04 | -0.207 | 0.806 |
| BXD05 | 0.405 | -0.84 |
| BXD06 | 0.495 | 0.656 |
| BXD07 | 0.152 | -0.661 |
| BXD08 | 0.36 | 0.842 |
| BXD09 | 0.249 | 0.476 |
| CAST | 0.172 | -1.036 |
| CCcont | 0.265 | 0.026 |
| DS01 | -0.342 | -0.881 |
| DS02 | 0.0 | -0.865 |
| DS04 | -0.998 | -0.177 |
| DS0c | -0.984 | -1.985 |
| GP01 | 1.43 | -0.715 |
| GP02 | -0.742 | -1.558 |
| GP0c | -0.025 | -2.435 |
| NOD | 0.675 | -2.25 |
| NZO | 0.629 | 1.563 |
| PWK | -0.077 | 1.262 |
| H37Rv_KO_CtpC | 0.234 | -1.952 |
| H37Rv_KO_CtpD | -0.574 | -1.669 |
| H37Rv_KO_Rv1272 | -0.301 | -0.837 |
| H37Rv_KO_SugABC | -0.08 | -1.756 |
| H37Rv_KO_MbtN | -0.633 | -1.93 |
| Trans05 | 0.959 | -0.249 |
| macrophage_unactivated | 0.36 | 0.218 |
| IL1 | 0.498 | 0.492 |
| Rapamycin | 0.178 | 1.97 |
| Tcell | 0.0 | 1.026 |
| GMCSF | 0.488 | 1.513 |
| IFNab | 0.345 | 0.686 |
| IFNg | 0.588 | 1.657 |
| IFNg_GMCSF1 | -0.255 | 1.078 |
| Rv1432_day32 | -0.314 | -0.83 |
| Rv1565c_day32 | 0.595 | 0.218 |
| secA2_input | -0.852 | -3.073 |
| delta_Rv3594 | 1.028 | 0.145 |
| delta_Rv3717 | 0.405 | -0.365 |
| delta_Rv3811 | 0.732 | 1.086 |
| delta_Rv0954 | 0.22 | 0.2 |
| PonA1 | 1.019 | 0.65 |
| EccD1_KO | 0.181 | -0.819 |
| EspI_KO | -0.337 | -1.118 |
| PE35_KO | -0.085 | -2.85 |
| PPE68_KO | -0.378 | -1.984 |
| glycerol2 | 0.263 | 0.025 |
| lignocerate | 0.392 | 0.086 |
| oleate | -0.442 | 0.804 |
| phosphatidylcholine | 0.213 | 0.394 |
| acetate | 0.69 | -0.03 |
| glucAc | 0.903 | 0.453 |
| Rv0950ko | 1.722 | 2.557 |
| Rv1096ko | 1.722 | 2.346 |
| Rv3684ko | 1.392 | 2.548 |
| delta_otsA_trehalose | 0.05 | -0.329 |