Top 10 genes with highest correlation to Rv2318/uspC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1043c/- | (cc=0.4199) | info on Rv1043c/- |
| Rv3687c/rsfB | (cc=0.4172) | info on Rv3687c/rsfB |
| Rv0588/yrbE2B | (cc=0.4068) | info on Rv0588/yrbE2B |
| Rv2514c/- | (cc=0.4034) | info on Rv2514c/- |
| Rv2392/cysH | (cc=0.3962) | info on Rv2392/cysH |
| Rv0364/- | (cc=0.3846) | info on Rv0364/- |
| Rv0943c/- | (cc=0.3815) | info on Rv0943c/- |
| Rv3523/ltp3 | (cc=0.3781) | info on Rv3523/ltp3 |
| Rv0559c/- | (cc=0.3774) | info on Rv0559c/- |
| Rv1469/ctpD | (cc=0.3758) | info on Rv1469/ctpD |
Correlation of Rv2318/uspC with Rv1469/ctpD
Normalized LFCs for Rv2318/uspC:
(description and provenance of datasets)
| Rv2318/uspC | Rv1469/ctpD | |
| Fe_supp_jason_reseq | 1.013 | 0.152 |
| low_pH_jason_reseq | -0.452 | -1.591 |
| NO_jason_reseq | 0.352 | 0.252 |
| B6_jason_reseq | 0.527 | -0.259 |
| MHCII_jason_reseq | 0.193 | -0.547 |
| Isoniazid02 | 0.713 | 0.422 |
| Rifampicin4 | -0.712 | 0.032 |
| Ethambutol3 | 0.82 | 0.388 |
| Meropenem3 | 0.0 | -0.155 |
| Vancomycin16 | 0.743 | 0.191 |
| Rv2680_day32 | 0.38 | 0.284 |
| H37Rv_KO_MarP | -0.618 | -0.038 |
| hypoxia_3wks | 0.311 | -0.191 |
| hypoxia_6wks | -0.056 | 0.033 |
| glycerol | -0.432 | 0.246 |
| cholesterol | -0.057 | -0.452 |
| AJ | 0.296 | -0.617 |
| Bibs02 | 0.844 | -0.11 |
| Bibs02c | -0.447 | -0.153 |
| BL6 | 0.739 | 0.085 |
| BL6a | 0.624 | -0.527 |
| BXD01 | -0.051 | 0.075 |
| BXD010 | 1.385 | -0.061 |
| BXD011 | 2.132 | -0.547 |
| BXD03 | 1.526 | 0.273 |
| BXD04 | -0.207 | -0.488 |
| BXD05 | 0.405 | -0.259 |
| BXD06 | 0.495 | 0.031 |
| BXD07 | 0.152 | -0.229 |
| BXD08 | 0.36 | 0.105 |
| BXD09 | 0.249 | -0.374 |
| CAST | 0.172 | 0.42 |
| CCcont | 0.265 | 0.243 |
| DS01 | -0.342 | -0.358 |
| DS02 | 0.0 | 0.354 |
| DS04 | -0.998 | -1.522 |
| DS0c | -0.984 | -0.481 |
| GP01 | 1.43 | 0.988 |
| GP02 | -0.742 | 0.863 |
| GP0c | -0.025 | 0.625 |
| NOD | 0.675 | 0.721 |
| NZO | 0.629 | -1.12 |
| PWK | -0.077 | -0.27 |
| H37Rv_KO_CtpC | 0.234 | 0.198 |
| H37Rv_KO_CtpD | -0.574 | -0.818 |
| H37Rv_KO_Rv1272 | -0.301 | -0.085 |
| H37Rv_KO_SugABC | -0.08 | -1.655 |
| H37Rv_KO_MbtN | -0.633 | -0.538 |
| Trans05 | 0.959 | 0.374 |
| macrophage_unactivated | 0.36 | 0.177 |
| IL1 | 0.498 | -0.353 |
| Rapamycin | 0.178 | 0.172 |
| Tcell | 0.0 | -0.254 |
| GMCSF | 0.488 | -0.776 |
| IFNab | 0.345 | 0.0 |
| IFNg | 0.588 | -0.371 |
| IFNg_GMCSF1 | -0.255 | 0.06 |
| Rv1432_day32 | -0.314 | 0.455 |
| Rv1565c_day32 | 0.595 | 0.096 |
| secA2_input | -0.852 | -1.606 |
| delta_Rv3594 | 1.028 | -0.384 |
| delta_Rv3717 | 0.405 | -0.459 |
| delta_Rv3811 | 0.732 | -0.094 |
| delta_Rv0954 | 0.22 | -0.472 |
| PonA1 | 1.019 | 0.379 |
| EccD1_KO | 0.181 | -0.145 |
| EspI_KO | -0.337 | -0.676 |
| PE35_KO | -0.085 | -0.128 |
| PPE68_KO | -0.378 | -0.493 |
| glycerol2 | 0.263 | 0.46 |
| lignocerate | 0.392 | 0.57 |
| oleate | -0.442 | 0.064 |
| phosphatidylcholine | 0.213 | 0.608 |
| acetate | 0.69 | 0.399 |
| glucAc | 0.903 | 1.17 |
| Rv0950ko | 1.722 | 0.093 |
| Rv1096ko | 1.722 | 0.142 |
| Rv3684ko | 1.392 | 1.461 |
| delta_otsA_trehalose | 0.05 | -0.724 |