Top 10 genes with highest correlation to Rv2307D/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3120/- | (cc=0.53) | info on Rv3120/- |
| Rv2613c/- | (cc=0.5197) | info on Rv2613c/- |
| Rv1541c/lprI | (cc=0.5047) | info on Rv1541c/lprI |
| Rv0441c/- | (cc=0.4972) | info on Rv0441c/- |
| Rv1027c/kdpE | (cc=0.4835) | info on Rv1027c/kdpE |
| Rv3100c/smpB | (cc=0.4831) | info on Rv3100c/smpB |
| Rv2418c/- | (cc=0.4797) | info on Rv2418c/- |
| Rv2872/vapC43 | (cc=0.4697) | info on Rv2872/vapC43 |
| Rv0419/lpqM | (cc=0.4686) | info on Rv0419/lpqM |
| Rv3571/kshB | (cc=0.4678) | info on Rv3571/kshB |
Correlation of Rv2307D/- with Rv3100c/smpB
Normalized LFCs for Rv2307D/-:
(description and provenance of datasets)
| Rv2307D/- | Rv3100c/smpB | |
| Fe_supp_jason_reseq | -0.633 | 0.38 |
| low_pH_jason_reseq | 0.391 | -0.231 |
| NO_jason_reseq | -0.386 | -0.362 |
| B6_jason_reseq | 0.546 | 3.094 |
| MHCII_jason_reseq | 0.535 | 0.0 |
| Isoniazid02 | -0.396 | -0.851 |
| Rifampicin4 | 0.671 | 0.252 |
| Ethambutol3 | -0.142 | 0.966 |
| Meropenem3 | -1.211 | -0.386 |
| Vancomycin16 | -0.247 | 0.48 |
| Rv2680_day32 | -0.27 | 0.0 |
| H37Rv_KO_MarP | 0.621 | 0.0 |
| hypoxia_3wks | -1.324 | -2.333 |
| hypoxia_6wks | -0.326 | -0.637 |
| glycerol | -1.419 | -0.459 |
| cholesterol | -1.301 | -2.31 |
| AJ | -0.694 | 1.859 |
| Bibs02 | -0.454 | 0.747 |
| Bibs02c | 1.291 | 0.58 |
| BL6 | -0.41 | -1.87 |
| BL6a | 0.273 | 0.214 |
| BXD01 | -0.601 | -1.947 |
| BXD010 | -0.203 | -0.187 |
| BXD011 | -0.269 | -2.032 |
| BXD03 | -1.201 | -2.022 |
| BXD04 | -0.839 | -1.973 |
| BXD05 | -0.63 | -2.012 |
| BXD06 | -0.916 | -2.129 |
| BXD07 | -0.067 | -1.829 |
| BXD08 | -1.679 | -1.868 |
| BXD09 | -1.126 | -2.242 |
| CAST | 0.487 | -0.657 |
| CCcont | -0.053 | -2.098 |
| DS01 | -1.305 | -0.974 |
| DS02 | -0.028 | 0.889 |
| DS04 | -1.536 | -2.412 |
| DS0c | 0.119 | -0.685 |
| GP01 | -1.164 | -1.304 |
| GP02 | -0.682 | -1.327 |
| GP0c | -1.308 | -2.074 |
| NOD | 0.809 | -0.449 |
| NZO | -1.542 | 0.688 |
| PWK | -0.878 | -0.045 |
| H37Rv_KO_CtpC | -1.493 | -2.282 |
| H37Rv_KO_CtpD | -1.379 | -1.398 |
| H37Rv_KO_Rv1272 | 0.791 | -2.25 |
| H37Rv_KO_SugABC | -0.705 | -1.481 |
| H37Rv_KO_MbtN | -0.616 | -1.541 |
| Trans05 | -0.118 | -2.084 |
| macrophage_unactivated | 0.278 | 0.0 |
| IL1 | 0.033 | 0.0 |
| Rapamycin | 1.077 | 0.0 |
| Tcell | 0.968 | 1.58 |
| GMCSF | 0.119 | 0.0 |
| IFNab | 0.925 | 3.44 |
| IFNg | 1.302 | 0.0 |
| IFNg_GMCSF1 | 1.967 | 0.434 |
| Rv1432_day32 | 0.851 | 0.0 |
| Rv1565c_day32 | 0.646 | 0.0 |
| secA2_input | -1.007 | 0.593 |
| delta_Rv3594 | 0.072 | -1.416 |
| delta_Rv3717 | 0.815 | 1.305 |
| delta_Rv3811 | 0.507 | -1.172 |
| delta_Rv0954 | 0.943 | -1.196 |
| PonA1 | 0.875 | 1.24 |
| EccD1_KO | 1.549 | 1.194 |
| EspI_KO | 1.643 | -0.305 |
| PE35_KO | 0.965 | 0.292 |
| PPE68_KO | 0.873 | 0.0 |
| glycerol2 | 0.673 | 0.193 |
| lignocerate | 1.047 | 0.0 |
| oleate | 0.39 | 0.0 |
| phosphatidylcholine | 0.637 | 0.0 |
| acetate | 0.69 | 0.0 |
| glucAc | 1.024 | 0.0 |
| Rv0950ko | 0.498 | 2.087 |
| Rv1096ko | 0.1 | 2.844 |
| Rv3684ko | -0.999 | 0.675 |
| delta_otsA_trehalose | 0.102 | 0.0 |