Top 10 genes with highest correlation to Rv2301/cut2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1407/fmu | (cc=0.5437) | info on Rv1407/fmu |
| Rv3322c/- | (cc=0.4415) | info on Rv3322c/- |
| Rv2114/- | (cc=0.3909) | info on Rv2114/- |
| Rv1961/- | (cc=0.3905) | info on Rv1961/- |
| Rv1846c/blaI | (cc=0.3847) | info on Rv1846c/blaI |
| Rv0038/- | (cc=0.3773) | info on Rv0038/- |
| Rv1999c/- | (cc=0.3708) | info on Rv1999c/- |
| Rv0969/ctpV | (cc=0.3651) | info on Rv0969/ctpV |
| Rv0571c/- | (cc=0.3643) | info on Rv0571c/- |
| Rv1527c/pks5 | (cc=0.3626) | info on Rv1527c/pks5 |
Correlation of Rv2301/cut2 with Rv1846c/blaI
Normalized LFCs for Rv2301/cut2:
(description and provenance of datasets)
| Rv2301/cut2 | Rv1846c/blaI | |
| Fe_supp_jason_reseq | -0.688 | 1.228 |
| low_pH_jason_reseq | -1.845 | -2.418 |
| NO_jason_reseq | 0.207 | 0.189 |
| B6_jason_reseq | -0.21 | -1.843 |
| MHCII_jason_reseq | -0.05 | 0.355 |
| Isoniazid02 | -0.048 | 0.901 |
| Rifampicin4 | 0.745 | -1.267 |
| Ethambutol3 | -0.5 | -0.326 |
| Meropenem3 | -0.117 | 0.204 |
| Vancomycin16 | 0.271 | -0.796 |
| Rv2680_day32 | -0.932 | -3.093 |
| H37Rv_KO_MarP | 0.278 | 0.268 |
| hypoxia_3wks | -0.355 | 0.271 |
| hypoxia_6wks | 0.246 | -1.37 |
| glycerol | -0.259 | -1.583 |
| cholesterol | 0.628 | -1.124 |
| AJ | -0.082 | -2.04 |
| Bibs02 | 0.171 | -0.354 |
| Bibs02c | 0.803 | 1.129 |
| BL6 | -0.821 | -3.872 |
| BL6a | 0.098 | -0.525 |
| BXD01 | -0.636 | -2.917 |
| BXD010 | -0.412 | -4.379 |
| BXD011 | -0.344 | -3.02 |
| BXD03 | -0.247 | -2.664 |
| BXD04 | -0.328 | -2.849 |
| BXD05 | -0.021 | -1.847 |
| BXD06 | -0.532 | -3.663 |
| BXD07 | -1.025 | -3.87 |
| BXD08 | -1.213 | -2.336 |
| BXD09 | -0.331 | -3.237 |
| CAST | -0.971 | -2.636 |
| CCcont | -0.078 | -2.433 |
| DS01 | 0.796 | 0.14 |
| DS02 | -0.104 | 1.275 |
| DS04 | -0.093 | -0.086 |
| DS0c | -0.416 | -0.545 |
| GP01 | 0.555 | -0.877 |
| GP02 | 0.101 | -1.601 |
| GP0c | 0.39 | -1.516 |
| NOD | -0.452 | -1.726 |
| NZO | 0.37 | -1.787 |
| PWK | -0.142 | -1.758 |
| H37Rv_KO_CtpC | -1.422 | -2.732 |
| H37Rv_KO_CtpD | -0.505 | -2.466 |
| H37Rv_KO_Rv1272 | -0.251 | -1.974 |
| H37Rv_KO_SugABC | 0.581 | -1.211 |
| H37Rv_KO_MbtN | -0.337 | -0.641 |
| Trans05 | 1.595 | -2.346 |
| macrophage_unactivated | -0.035 | -0.073 |
| IL1 | -0.537 | -0.67 |
| Rapamycin | -0.104 | -0.611 |
| Tcell | -0.228 | -1.613 |
| GMCSF | -0.106 | 0.972 |
| IFNab | 0.169 | 0.653 |
| IFNg | -0.045 | -1.235 |
| IFNg_GMCSF1 | -0.371 | 2.256 |
| Rv1432_day32 | -0.975 | -0.632 |
| Rv1565c_day32 | -0.82 | 0.706 |
| secA2_input | 0.283 | -0.593 |
| delta_Rv3594 | 0.408 | 0.22 |
| delta_Rv3717 | 0.468 | 0.052 |
| delta_Rv3811 | 0.636 | 0.904 |
| delta_Rv0954 | 0.531 | 0.249 |
| PonA1 | -0.432 | 0.869 |
| EccD1_KO | -0.092 | 0.908 |
| EspI_KO | -0.197 | 0.279 |
| PE35_KO | 0.096 | -0.152 |
| PPE68_KO | -0.163 | 0.07 |
| glycerol2 | 0.199 | 1.499 |
| lignocerate | 0.084 | 0.168 |
| oleate | -0.179 | 0.196 |
| phosphatidylcholine | -0.102 | 0.0 |
| acetate | 0.451 | 0.0 |
| glucAc | 0.16 | 0.0 |
| Rv0950ko | 0.603 | 2.249 |
| Rv1096ko | -0.103 | -0.175 |
| Rv3684ko | 0.252 | 1.621 |
| delta_otsA_trehalose | 0.003 | -0.429 |