TnSeqCorr

Top 10 genes with highest correlation to Rv2301/cut2:

update plotcorrelationlink to info on gene
Rv1407/fmu (cc=0.5437) info on Rv1407/fmu
Rv3322c/- (cc=0.4415) info on Rv3322c/-
Rv2114/- (cc=0.3909) info on Rv2114/-
Rv1961/- (cc=0.3905) info on Rv1961/-
Rv1846c/blaI (cc=0.3847) info on Rv1846c/blaI
Rv0038/- (cc=0.3773) info on Rv0038/-
Rv1999c/- (cc=0.3708) info on Rv1999c/-
Rv0969/ctpV (cc=0.3651) info on Rv0969/ctpV
Rv0571c/- (cc=0.3643) info on Rv0571c/-
Rv1527c/pks5 (cc=0.3626) info on Rv1527c/pks5

Correlation of Rv2301/cut2 with Rv0969/ctpV

Normalized LFCs for Rv2301/cut2:
(description and provenance of datasets)
Rv2301/cut2Rv0969/ctpV
Fe_supp_jason_reseq

-0.688

-0.535

low_pH_jason_reseq

-1.845

-1.522

NO_jason_reseq

0.207

-0.362

B6_jason_reseq

-0.21

-0.715

MHCII_jason_reseq

-0.05

-0.391

Isoniazid02

-0.048

0.397

Rifampicin4

0.745

-0.233

Ethambutol3

-0.5

0.581

Meropenem3

-0.117

0.492

Vancomycin16

0.271

-0.324

Rv2680_day32

-0.932

-0.154

H37Rv_KO_MarP

0.278

0.26

hypoxia_3wks

-0.355

-0.211

hypoxia_6wks

0.246

0.127

glycerol

-0.259

0.291

cholesterol

0.628

0.358

AJ

-0.082

0.44

Bibs02

0.171

0.648

Bibs02c

0.803

0.576

BL6

-0.821

-0.084

BL6a

0.098

0.264

BXD01

-0.636

-0.556

BXD010

-0.412

-0.288

BXD011

-0.344

-0.24

BXD03

-0.247

-0.743

BXD04

-0.328

-0.305

BXD05

-0.021

0.268

BXD06

-0.532

-0.558

BXD07

-1.025

-0.301

BXD08

-1.213

-0.299

BXD09

-0.331

-0.216

CAST

-0.971

-0.534

CCcont

-0.078

-0.391

DS01

0.796

0.303

DS02

-0.104

0.15

DS04

-0.093

0.611

DS0c

-0.416

-0.039

GP01

0.555

0.358

GP02

0.101

-0.205

GP0c

0.39

-0.063

NOD

-0.452

-0.109

NZO

0.37

0.046

PWK

-0.142

-0.483

H37Rv_KO_CtpC

-1.422

0.139

H37Rv_KO_CtpD

-0.505

-0.802

H37Rv_KO_Rv1272

-0.251

0.057

H37Rv_KO_SugABC

0.581

0.616

H37Rv_KO_MbtN

-0.337

-0.877

Trans05

1.595

-0.139

macrophage_unactivated

-0.035

0.694

IL1

-0.537

-0.11

Rapamycin

-0.104

0.11

Tcell

-0.228

0.059

GMCSF

-0.106

-0.148

IFNab

0.169

0.163

IFNg

-0.045

0.371

IFNg_GMCSF1

-0.371

0.616

Rv1432_day32

-0.975

0.322

Rv1565c_day32

-0.82

-0.264

secA2_input

0.283

0.892

delta_Rv3594

0.408

-0.32

delta_Rv3717

0.468

-0.328

delta_Rv3811

0.636

0.318

delta_Rv0954

0.531

0.143

PonA1

-0.432

0.324

EccD1_KO

-0.092

0.382

EspI_KO

-0.197

0.24

PE35_KO

0.096

0.292

PPE68_KO

-0.163

0.218

glycerol2

0.199

0.15

lignocerate

0.084

0.144

oleate

-0.179

0.119

phosphatidylcholine

-0.102

0.333

acetate

0.451

0.08

glucAc

0.16

0.157

Rv0950ko

0.603

0.223

Rv1096ko

-0.103

1.077

Rv3684ko

0.252

0.609

delta_otsA_trehalose

0.003

2.032