Top 10 genes with highest correlation to Rv2301/cut2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1407/fmu | (cc=0.5437) | info on Rv1407/fmu |
| Rv3322c/- | (cc=0.4415) | info on Rv3322c/- |
| Rv2114/- | (cc=0.3909) | info on Rv2114/- |
| Rv1961/- | (cc=0.3905) | info on Rv1961/- |
| Rv1846c/blaI | (cc=0.3847) | info on Rv1846c/blaI |
| Rv0038/- | (cc=0.3773) | info on Rv0038/- |
| Rv1999c/- | (cc=0.3708) | info on Rv1999c/- |
| Rv0969/ctpV | (cc=0.3651) | info on Rv0969/ctpV |
| Rv0571c/- | (cc=0.3643) | info on Rv0571c/- |
| Rv1527c/pks5 | (cc=0.3626) | info on Rv1527c/pks5 |
Correlation of Rv2301/cut2 with Rv1407/fmu
Normalized LFCs for Rv2301/cut2:
(description and provenance of datasets)
| Rv2301/cut2 | Rv1407/fmu | |
| Fe_supp_jason_reseq | -0.688 | -0.467 |
| low_pH_jason_reseq | -1.845 | -2.391 |
| NO_jason_reseq | 0.207 | 0.053 |
| B6_jason_reseq | -0.21 | -1.467 |
| MHCII_jason_reseq | -0.05 | -0.217 |
| Isoniazid02 | -0.048 | 1.15 |
| Rifampicin4 | 0.745 | 0.866 |
| Ethambutol3 | -0.5 | -0.123 |
| Meropenem3 | -0.117 | 0.089 |
| Vancomycin16 | 0.271 | 0.249 |
| Rv2680_day32 | -0.932 | -0.573 |
| H37Rv_KO_MarP | 0.278 | -0.072 |
| hypoxia_3wks | -0.355 | -0.159 |
| hypoxia_6wks | 0.246 | -0.683 |
| glycerol | -0.259 | 2.042 |
| cholesterol | 0.628 | 1.49 |
| AJ | -0.082 | -0.514 |
| Bibs02 | 0.171 | -0.24 |
| Bibs02c | 0.803 | 0.929 |
| BL6 | -0.821 | -0.208 |
| BL6a | 0.098 | 0.23 |
| BXD01 | -0.636 | -0.419 |
| BXD010 | -0.412 | -0.677 |
| BXD011 | -0.344 | -0.962 |
| BXD03 | -0.247 | -0.615 |
| BXD04 | -0.328 | -0.787 |
| BXD05 | -0.021 | -0.934 |
| BXD06 | -0.532 | -0.607 |
| BXD07 | -1.025 | -1.233 |
| BXD08 | -1.213 | -0.246 |
| BXD09 | -0.331 | -0.975 |
| CAST | -0.971 | -0.646 |
| CCcont | -0.078 | 0.214 |
| DS01 | 0.796 | 0.036 |
| DS02 | -0.104 | -0.173 |
| DS04 | -0.093 | 0.698 |
| DS0c | -0.416 | -1.571 |
| GP01 | 0.555 | 0.902 |
| GP02 | 0.101 | -0.34 |
| GP0c | 0.39 | -0.474 |
| NOD | -0.452 | -1.022 |
| NZO | 0.37 | -0.331 |
| PWK | -0.142 | -0.435 |
| H37Rv_KO_CtpC | -1.422 | -0.859 |
| H37Rv_KO_CtpD | -0.505 | -0.407 |
| H37Rv_KO_Rv1272 | -0.251 | 0.346 |
| H37Rv_KO_SugABC | 0.581 | 0.42 |
| H37Rv_KO_MbtN | -0.337 | 0.148 |
| Trans05 | 1.595 | 0.717 |
| macrophage_unactivated | -0.035 | -0.451 |
| IL1 | -0.537 | -0.7 |
| Rapamycin | -0.104 | 0.476 |
| Tcell | -0.228 | -0.274 |
| GMCSF | -0.106 | 0.071 |
| IFNab | 0.169 | -0.166 |
| IFNg | -0.045 | -1.184 |
| IFNg_GMCSF1 | -0.371 | -0.742 |
| Rv1432_day32 | -0.975 | 0.13 |
| Rv1565c_day32 | -0.82 | -0.063 |
| secA2_input | 0.283 | -0.142 |
| delta_Rv3594 | 0.408 | 0.951 |
| delta_Rv3717 | 0.468 | 1.682 |
| delta_Rv3811 | 0.636 | 0.546 |
| delta_Rv0954 | 0.531 | 0.788 |
| PonA1 | -0.432 | -0.631 |
| EccD1_KO | -0.092 | 0.23 |
| EspI_KO | -0.197 | -0.667 |
| PE35_KO | 0.096 | 0.904 |
| PPE68_KO | -0.163 | -0.141 |
| glycerol2 | 0.199 | -0.832 |
| lignocerate | 0.084 | -0.57 |
| oleate | -0.179 | -0.291 |
| phosphatidylcholine | -0.102 | -0.287 |
| acetate | 0.451 | 0.057 |
| glucAc | 0.16 | -0.112 |
| Rv0950ko | 0.603 | 1.089 |
| Rv1096ko | -0.103 | 1.526 |
| Rv3684ko | 0.252 | 0.603 |
| delta_otsA_trehalose | 0.003 | -1.541 |