Top 10 genes with highest correlation to Rv2296/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1733c/- | (cc=0.5323) | info on Rv1733c/- |
| Rv3120/- | (cc=0.5317) | info on Rv3120/- |
| Rv2042c/- | (cc=0.5277) | info on Rv2042c/- |
| Rv2827c/- | (cc=0.5051) | info on Rv2827c/- |
| Rv2599/- | (cc=0.4852) | info on Rv2599/- |
| Rv2980/- | (cc=0.4766) | info on Rv2980/- |
| Rv3736/- | (cc=0.4619) | info on Rv3736/- |
| Rv2639c/- | (cc=0.4577) | info on Rv2639c/- |
| Rv2174/mptA | (cc=0.4525) | info on Rv2174/mptA |
| Rv1646/PE17 | (cc=0.4464) | info on Rv1646/PE17 |
Correlation of Rv2296/- with Rv2174/mptA
Normalized LFCs for Rv2296/-:
(description and provenance of datasets)
| Rv2296/- | Rv2174/mptA | |
| Fe_supp_jason_reseq | 0.044 | 1.07 |
| low_pH_jason_reseq | -0.146 | -0.539 |
| NO_jason_reseq | 0.192 | 0.244 |
| B6_jason_reseq | -0.606 | 0.685 |
| MHCII_jason_reseq | -0.186 | 0.406 |
| Isoniazid02 | -0.017 | 0.23 |
| Rifampicin4 | 0.152 | -0.653 |
| Ethambutol3 | 0.058 | 0.841 |
| Meropenem3 | -0.133 | -0.951 |
| Vancomycin16 | -0.011 | -0.47 |
| Rv2680_day32 | 0.351 | -1.824 |
| H37Rv_KO_MarP | -0.102 | -0.073 |
| hypoxia_3wks | 0.195 | 1.013 |
| hypoxia_6wks | 0.2 | -0.119 |
| glycerol | 0.0 | 0.0 |
| cholesterol | -0.134 | 0.154 |
| AJ | 0.146 | 0.0 |
| Bibs02 | 0.056 | -0.376 |
| Bibs02c | 0.199 | 0.152 |
| BL6 | -0.164 | -0.315 |
| BL6a | 0.0 | -0.595 |
| BXD01 | 0.284 | -0.154 |
| BXD010 | 0.005 | -0.519 |
| BXD011 | 0.109 | -1.021 |
| BXD03 | -0.926 | -0.624 |
| BXD04 | -0.308 | -0.992 |
| BXD05 | 0.659 | -0.405 |
| BXD06 | 0.018 | -0.967 |
| BXD07 | 0.069 | -1.003 |
| BXD08 | 0.245 | -1.177 |
| BXD09 | -0.019 | -0.422 |
| CAST | 0.077 | 0.0 |
| CCcont | -0.679 | -0.779 |
| DS01 | 0.332 | 0.479 |
| DS02 | -0.496 | -0.257 |
| DS04 | -0.041 | -0.312 |
| DS0c | 0.707 | -0.082 |
| GP01 | -0.326 | 0.769 |
| GP02 | 1.042 | -0.134 |
| GP0c | 0.061 | 0.815 |
| NOD | 0.709 | -0.675 |
| NZO | -0.007 | -0.41 |
| PWK | 0.246 | -0.074 |
| H37Rv_KO_CtpC | -0.194 | 0.118 |
| H37Rv_KO_CtpD | 0.131 | -1.237 |
| H37Rv_KO_Rv1272 | -0.322 | -1.248 |
| H37Rv_KO_SugABC | 0.325 | 0.699 |
| H37Rv_KO_MbtN | -0.014 | 0.209 |
| Trans05 | -0.298 | -0.21 |
| macrophage_unactivated | 0.0 | -0.234 |
| IL1 | -0.528 | -0.955 |
| Rapamycin | -0.074 | -1.274 |
| Tcell | -0.371 | -0.762 |
| GMCSF | -0.18 | -1.096 |
| IFNab | -0.057 | 0.0 |
| IFNg | 0.283 | -0.861 |
| IFNg_GMCSF1 | -0.408 | -1.012 |
| Rv1432_day32 | 0.233 | -0.222 |
| Rv1565c_day32 | 0.287 | 0.0 |
| secA2_input | 0.477 | 0.675 |
| delta_Rv3594 | 0.902 | 1.366 |
| delta_Rv3717 | 0.464 | 1.384 |
| delta_Rv3811 | 0.857 | 2.357 |
| delta_Rv0954 | -0.045 | 0.925 |
| PonA1 | 0.439 | 0.419 |
| EccD1_KO | 1.204 | 1.365 |
| EspI_KO | 0.73 | -1.035 |
| PE35_KO | 1.205 | 1.21 |
| PPE68_KO | 1.353 | 1.133 |
| glycerol2 | 0.601 | -0.231 |
| lignocerate | 0.029 | -0.913 |
| oleate | 1.0 | 0.159 |
| phosphatidylcholine | 0.402 | -0.171 |
| acetate | -0.289 | -1.358 |
| glucAc | -0.705 | -1.809 |
| Rv0950ko | 0.368 | 0.211 |
| Rv1096ko | -0.299 | -0.706 |
| Rv3684ko | -0.373 | -1.055 |
| delta_otsA_trehalose | -1.025 | -0.254 |