Top 10 genes with highest correlation to Rv2296/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1733c/- | (cc=0.5323) | info on Rv1733c/- |
| Rv3120/- | (cc=0.5317) | info on Rv3120/- |
| Rv2042c/- | (cc=0.5277) | info on Rv2042c/- |
| Rv2827c/- | (cc=0.5051) | info on Rv2827c/- |
| Rv2599/- | (cc=0.4852) | info on Rv2599/- |
| Rv2980/- | (cc=0.4766) | info on Rv2980/- |
| Rv3736/- | (cc=0.4619) | info on Rv3736/- |
| Rv2639c/- | (cc=0.4577) | info on Rv2639c/- |
| Rv2174/mptA | (cc=0.4525) | info on Rv2174/mptA |
| Rv1646/PE17 | (cc=0.4464) | info on Rv1646/PE17 |
Correlation of Rv2296/- with Rv1733c/-
Normalized LFCs for Rv2296/-:
(description and provenance of datasets)
| Rv2296/- | Rv1733c/- | |
| Fe_supp_jason_reseq | 0.044 | -4.963 |
| low_pH_jason_reseq | -0.146 | -2.784 |
| NO_jason_reseq | 0.192 | -0.609 |
| B6_jason_reseq | -0.606 | 0.128 |
| MHCII_jason_reseq | -0.186 | -0.017 |
| Isoniazid02 | -0.017 | -0.32 |
| Rifampicin4 | 0.152 | 0.162 |
| Ethambutol3 | 0.058 | 0.089 |
| Meropenem3 | -0.133 | 0.298 |
| Vancomycin16 | -0.011 | -0.358 |
| Rv2680_day32 | 0.351 | -0.435 |
| H37Rv_KO_MarP | -0.102 | -0.763 |
| hypoxia_3wks | 0.195 | -1.463 |
| hypoxia_6wks | 0.2 | -3.55 |
| glycerol | 0.0 | -2.017 |
| cholesterol | -0.134 | -0.435 |
| AJ | 0.146 | 0.212 |
| Bibs02 | 0.056 | -0.988 |
| Bibs02c | 0.199 | 0.726 |
| BL6 | -0.164 | -1.864 |
| BL6a | 0.0 | -0.346 |
| BXD01 | 0.284 | -1.445 |
| BXD010 | 0.005 | -0.026 |
| BXD011 | 0.109 | -1.747 |
| BXD03 | -0.926 | -1.781 |
| BXD04 | -0.308 | -2.163 |
| BXD05 | 0.659 | -1.821 |
| BXD06 | 0.018 | -1.688 |
| BXD07 | 0.069 | -1.347 |
| BXD08 | 0.245 | -2.327 |
| BXD09 | -0.019 | -1.046 |
| CAST | 0.077 | 0.167 |
| CCcont | -0.679 | -2.921 |
| DS01 | 0.332 | -0.236 |
| DS02 | -0.496 | -1.407 |
| DS04 | -0.041 | -0.877 |
| DS0c | 0.707 | 0.137 |
| GP01 | -0.326 | -2.033 |
| GP02 | 1.042 | -1.915 |
| GP0c | 0.061 | -0.258 |
| NOD | 0.709 | 2.128 |
| NZO | -0.007 | 1.508 |
| PWK | 0.246 | -0.274 |
| H37Rv_KO_CtpC | -0.194 | -2.354 |
| H37Rv_KO_CtpD | 0.131 | 0.974 |
| H37Rv_KO_Rv1272 | -0.322 | -1.934 |
| H37Rv_KO_SugABC | 0.325 | -1.97 |
| H37Rv_KO_MbtN | -0.014 | -1.803 |
| Trans05 | -0.298 | -2.645 |
| macrophage_unactivated | 0.0 | -1.291 |
| IL1 | -0.528 | 0.053 |
| Rapamycin | -0.074 | -3.716 |
| Tcell | -0.371 | -1.652 |
| GMCSF | -0.18 | -0.557 |
| IFNab | -0.057 | -0.828 |
| IFNg | 0.283 | -0.909 |
| IFNg_GMCSF1 | -0.408 | -0.927 |
| Rv1432_day32 | 0.233 | 0.343 |
| Rv1565c_day32 | 0.287 | -1.355 |
| secA2_input | 0.477 | 0.776 |
| delta_Rv3594 | 0.902 | 2.899 |
| delta_Rv3717 | 0.464 | 2.64 |
| delta_Rv3811 | 0.857 | 2.528 |
| delta_Rv0954 | -0.045 | 1.203 |
| PonA1 | 0.439 | -1.937 |
| EccD1_KO | 1.204 | 0.661 |
| EspI_KO | 0.73 | 2.33 |
| PE35_KO | 1.205 | 1.89 |
| PPE68_KO | 1.353 | 2.288 |
| glycerol2 | 0.601 | 1.16 |
| lignocerate | 0.029 | -0.604 |
| oleate | 1.0 | 2.025 |
| phosphatidylcholine | 0.402 | 0.487 |
| acetate | -0.289 | -1.736 |
| glucAc | -0.705 | -3.147 |
| Rv0950ko | 0.368 | 0.0 |
| Rv1096ko | -0.299 | -0.826 |
| Rv3684ko | -0.373 | -3.098 |
| delta_otsA_trehalose | -1.025 | -0.625 |