Top 10 genes with highest correlation to Rv2252/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0697/- | (cc=0.4786) | info on Rv0697/- |
| Rv2403c/lppR | (cc=0.4473) | info on Rv2403c/lppR |
| Rv2620c/- | (cc=0.392) | info on Rv2620c/- |
| Rv3069/- | (cc=0.3882) | info on Rv3069/- |
| Rv2740/ephG | (cc=0.3881) | info on Rv2740/ephG |
| Rv3215/entC | (cc=0.3845) | info on Rv3215/entC |
| Rv2455c/- | (cc=0.3739) | info on Rv2455c/- |
| Rv2454c/- | (cc=0.3708) | info on Rv2454c/- |
| Rv2461c/clpP1 | (cc=0.3563) | info on Rv2461c/clpP1 |
| Rv2043c/pncA | (cc=0.3563) | info on Rv2043c/pncA |
Correlation of Rv2252/- with Rv2620c/-
Normalized LFCs for Rv2252/-:
(description and provenance of datasets)
| Rv2252/- | Rv2620c/- | |
| Fe_supp_jason_reseq | 0.268 | 1.026 |
| low_pH_jason_reseq | 0.371 | -1.017 |
| NO_jason_reseq | 0.446 | -2.268 |
| B6_jason_reseq | 0.777 | -0.493 |
| MHCII_jason_reseq | 1.625 | -0.611 |
| Isoniazid02 | 0.787 | 0.738 |
| Rifampicin4 | 0.0 | 0.192 |
| Ethambutol3 | 0.0 | 0.524 |
| Meropenem3 | -0.254 | 0.879 |
| Vancomycin16 | 0.0 | 0.329 |
| Rv2680_day32 | -0.131 | -0.886 |
| H37Rv_KO_MarP | -0.43 | -0.329 |
| hypoxia_3wks | 0.12 | 0.259 |
| hypoxia_6wks | 0.063 | -0.061 |
| glycerol | 0.0 | -0.979 |
| cholesterol | -0.159 | -0.344 |
| AJ | -0.541 | -0.966 |
| Bibs02 | 0.502 | -0.215 |
| Bibs02c | -0.23 | -0.715 |
| BL6 | 0.217 | -0.171 |
| BL6a | 0.377 | -0.189 |
| BXD01 | 0.054 | -0.824 |
| BXD010 | -1.039 | -0.748 |
| BXD011 | 1.085 | -0.689 |
| BXD03 | -0.214 | -0.704 |
| BXD04 | 0.051 | 0.495 |
| BXD05 | 0.302 | -0.605 |
| BXD06 | -0.211 | -0.402 |
| BXD07 | 0.38 | -0.507 |
| BXD08 | -0.177 | -1.413 |
| BXD09 | -0.091 | -0.396 |
| CAST | -0.661 | -2.611 |
| CCcont | -0.199 | 0.661 |
| DS01 | -0.315 | -1.862 |
| DS02 | 0.377 | -1.905 |
| DS04 | -0.453 | -0.384 |
| DS0c | -1.397 | -1.815 |
| GP01 | 0.021 | 0.175 |
| GP02 | 1.364 | 1.757 |
| GP0c | -0.337 | 0.157 |
| NOD | -1.279 | -2.88 |
| NZO | 0.448 | -0.92 |
| PWK | -1.117 | -1.651 |
| H37Rv_KO_CtpC | -0.758 | -0.787 |
| H37Rv_KO_CtpD | -0.027 | -0.433 |
| H37Rv_KO_Rv1272 | 0.364 | 0.264 |
| H37Rv_KO_SugABC | -1.477 | -1.414 |
| H37Rv_KO_MbtN | -0.791 | -1.048 |
| Trans05 | -0.411 | -0.224 |
| macrophage_unactivated | 1.105 | 0.085 |
| IL1 | -0.11 | 0.848 |
| Rapamycin | 0.424 | 0.675 |
| Tcell | 0.45 | 0.326 |
| GMCSF | 1.545 | 1.626 |
| IFNab | 0.514 | 0.463 |
| IFNg | 1.689 | 0.927 |
| IFNg_GMCSF1 | 1.191 | 0.393 |
| Rv1432_day32 | -0.445 | -1.97 |
| Rv1565c_day32 | 0.131 | -1.617 |
| secA2_input | -2.311 | 0.502 |
| delta_Rv3594 | 1.037 | -0.48 |
| delta_Rv3717 | 0.331 | -0.841 |
| delta_Rv3811 | -0.33 | -1.016 |
| delta_Rv0954 | 0.249 | -0.359 |
| PonA1 | 0.691 | -1.353 |
| EccD1_KO | 0.997 | 0.75 |
| EspI_KO | -0.588 | 0.436 |
| PE35_KO | 0.648 | 0.295 |
| PPE68_KO | 0.841 | 0.045 |
| glycerol2 | 0.05 | 0.979 |
| lignocerate | 0.357 | 1.218 |
| oleate | 0.147 | 0.873 |
| phosphatidylcholine | 0.193 | 1.326 |
| acetate | 0.173 | 0.462 |
| glucAc | 0.037 | 0.973 |
| Rv0950ko | 0.0 | 0.549 |
| Rv1096ko | 0.112 | 0.621 |
| Rv3684ko | -0.511 | -0.285 |
| delta_otsA_trehalose | 0.818 | -0.087 |