Top 10 genes with highest correlation to Rv2252/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0697/- | (cc=0.4786) | info on Rv0697/- |
| Rv2403c/lppR | (cc=0.4473) | info on Rv2403c/lppR |
| Rv2620c/- | (cc=0.392) | info on Rv2620c/- |
| Rv3069/- | (cc=0.3882) | info on Rv3069/- |
| Rv2740/ephG | (cc=0.3881) | info on Rv2740/ephG |
| Rv3215/entC | (cc=0.3845) | info on Rv3215/entC |
| Rv2455c/- | (cc=0.3739) | info on Rv2455c/- |
| Rv2454c/- | (cc=0.3708) | info on Rv2454c/- |
| Rv2461c/clpP1 | (cc=0.3563) | info on Rv2461c/clpP1 |
| Rv2043c/pncA | (cc=0.3563) | info on Rv2043c/pncA |
Correlation of Rv2252/- with Rv2403c/lppR
Normalized LFCs for Rv2252/-:
(description and provenance of datasets)
| Rv2252/- | Rv2403c/lppR | |
| Fe_supp_jason_reseq | 0.268 | -0.592 |
| low_pH_jason_reseq | 0.371 | -3.559 |
| NO_jason_reseq | 0.446 | 1.727 |
| B6_jason_reseq | 0.777 | 0.436 |
| MHCII_jason_reseq | 1.625 | 1.955 |
| Isoniazid02 | 0.787 | 1.586 |
| Rifampicin4 | 0.0 | -2.502 |
| Ethambutol3 | 0.0 | -0.799 |
| Meropenem3 | -0.254 | -1.689 |
| Vancomycin16 | 0.0 | -0.576 |
| Rv2680_day32 | -0.131 | -0.736 |
| H37Rv_KO_MarP | -0.43 | 0.284 |
| hypoxia_3wks | 0.12 | -0.056 |
| hypoxia_6wks | 0.063 | -0.672 |
| glycerol | 0.0 | -1.112 |
| cholesterol | -0.159 | -0.056 |
| AJ | -0.541 | 0.854 |
| Bibs02 | 0.502 | -1.821 |
| Bibs02c | -0.23 | 0.026 |
| BL6 | 0.217 | -2.152 |
| BL6a | 0.377 | 0.729 |
| BXD01 | 0.054 | 0.095 |
| BXD010 | -1.039 | -0.307 |
| BXD011 | 1.085 | 0.137 |
| BXD03 | -0.214 | -1.031 |
| BXD04 | 0.051 | 0.529 |
| BXD05 | 0.302 | -0.301 |
| BXD06 | -0.211 | 0.328 |
| BXD07 | 0.38 | 0.27 |
| BXD08 | -0.177 | -0.016 |
| BXD09 | -0.091 | 0.302 |
| CAST | -0.661 | 0.057 |
| CCcont | -0.199 | -0.506 |
| DS01 | -0.315 | 0.359 |
| DS02 | 0.377 | 1.221 |
| DS04 | -0.453 | 0.679 |
| DS0c | -1.397 | 0.053 |
| GP01 | 0.021 | 1.638 |
| GP02 | 1.364 | 0.979 |
| GP0c | -0.337 | 0.11 |
| NOD | -1.279 | -1.544 |
| NZO | 0.448 | 0.786 |
| PWK | -1.117 | -0.502 |
| H37Rv_KO_CtpC | -0.758 | -1.326 |
| H37Rv_KO_CtpD | -0.027 | -0.645 |
| H37Rv_KO_Rv1272 | 0.364 | 0.901 |
| H37Rv_KO_SugABC | -1.477 | -1.704 |
| H37Rv_KO_MbtN | -0.791 | -0.546 |
| Trans05 | -0.411 | 0.979 |
| macrophage_unactivated | 1.105 | 1.3 |
| IL1 | -0.11 | 0.243 |
| Rapamycin | 0.424 | 0.043 |
| Tcell | 0.45 | 0.984 |
| GMCSF | 1.545 | -0.916 |
| IFNab | 0.514 | 0.774 |
| IFNg | 1.689 | 1.042 |
| IFNg_GMCSF1 | 1.191 | 0.459 |
| Rv1432_day32 | -0.445 | -0.532 |
| Rv1565c_day32 | 0.131 | 0.218 |
| secA2_input | -2.311 | -2.923 |
| delta_Rv3594 | 1.037 | 1.41 |
| delta_Rv3717 | 0.331 | 0.746 |
| delta_Rv3811 | -0.33 | -0.281 |
| delta_Rv0954 | 0.249 | 0.678 |
| PonA1 | 0.691 | -0.394 |
| EccD1_KO | 0.997 | 0.697 |
| EspI_KO | -0.588 | -0.793 |
| PE35_KO | 0.648 | -0.306 |
| PPE68_KO | 0.841 | 0.534 |
| glycerol2 | 0.05 | -0.158 |
| lignocerate | 0.357 | 0.93 |
| oleate | 0.147 | -0.245 |
| phosphatidylcholine | 0.193 | 0.412 |
| acetate | 0.173 | 1.45 |
| glucAc | 0.037 | 0.538 |
| Rv0950ko | 0.0 | -1.321 |
| Rv1096ko | 0.112 | -0.492 |
| Rv3684ko | -0.511 | 0.0 |
| delta_otsA_trehalose | 0.818 | 0.103 |