Top 10 genes with highest correlation to Rv2237A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2007c/fdxA | (cc=0.7036) | info on Rv2007c/fdxA |
| Rv1852/ureG | (cc=0.6923) | info on Rv1852/ureG |
| Rv1038c/esxJ | (cc=0.6812) | info on Rv1038c/esxJ |
| Rv0964c/- | (cc=0.6611) | info on Rv0964c/- |
| Rv2240c/- | (cc=0.6602) | info on Rv2240c/- |
| Rv2613c/- | (cc=0.6221) | info on Rv2613c/- |
| Rv0870c/- | (cc=0.6004) | info on Rv0870c/- |
| Rv2019/- | (cc=0.596) | info on Rv2019/- |
| Rv2499c/- | (cc=0.5917) | info on Rv2499c/- |
| Rv1999c/- | (cc=0.5872) | info on Rv1999c/- |
Correlation of Rv2237A/- with Rv1852/ureG
Normalized LFCs for Rv2237A/-:
(description and provenance of datasets)
| Rv2237A/- | Rv1852/ureG | |
| Fe_supp_jason_reseq | 1.1 | -0.595 |
| low_pH_jason_reseq | -0.631 | -1.722 |
| NO_jason_reseq | -0.32 | -0.507 |
| B6_jason_reseq | -0.363 | -2.156 |
| MHCII_jason_reseq | -0.119 | -2.675 |
| Isoniazid02 | 0.362 | 0.416 |
| Rifampicin4 | 0.42 | -0.349 |
| Ethambutol3 | 0.275 | 0.084 |
| Meropenem3 | 1.324 | 0.672 |
| Vancomycin16 | -0.146 | 0.0 |
| Rv2680_day32 | -0.978 | -2.715 |
| H37Rv_KO_MarP | -0.181 | 0.837 |
| hypoxia_3wks | -0.606 | -1.95 |
| hypoxia_6wks | -2.552 | -1.169 |
| glycerol | -0.162 | -0.844 |
| cholesterol | -0.957 | 0.341 |
| AJ | -0.171 | 0.449 |
| Bibs02 | -0.011 | -0.053 |
| Bibs02c | -0.634 | -0.497 |
| BL6 | -1.255 | 0.103 |
| BL6a | -1.158 | -1.808 |
| BXD01 | -2.152 | -1.786 |
| BXD010 | -1.848 | -2.505 |
| BXD011 | -1.339 | -0.67 |
| BXD03 | -1.858 | -0.738 |
| BXD04 | -1.646 | -1.434 |
| BXD05 | -2.148 | -0.359 |
| BXD06 | -1.59 | -1.859 |
| BXD07 | -2.937 | -1.841 |
| BXD08 | -1.02 | -0.832 |
| BXD09 | -1.931 | -1.404 |
| CAST | -1.253 | -0.108 |
| CCcont | -1.09 | -0.829 |
| DS01 | 0.599 | -1.711 |
| DS02 | 0.348 | -0.696 |
| DS04 | 0.046 | -0.637 |
| DS0c | 0.55 | 0.281 |
| GP01 | -2.855 | -1.354 |
| GP02 | -2.261 | -1.057 |
| GP0c | -2.818 | -1.728 |
| NOD | -0.965 | -1.679 |
| NZO | 1.238 | 0.451 |
| PWK | -1.147 | -0.176 |
| H37Rv_KO_CtpC | 0.029 | -1.598 |
| H37Rv_KO_CtpD | 1.152 | 0.105 |
| H37Rv_KO_Rv1272 | -0.671 | 0.293 |
| H37Rv_KO_SugABC | -2.615 | -0.825 |
| H37Rv_KO_MbtN | -1.135 | 0.029 |
| Trans05 | -3.449 | 0.727 |
| macrophage_unactivated | -1.657 | 0.581 |
| IL1 | 0.347 | -0.303 |
| Rapamycin | 1.565 | -0.313 |
| Tcell | -0.081 | -0.583 |
| GMCSF | 0.758 | -0.515 |
| IFNab | -0.635 | 1.016 |
| IFNg | -0.877 | -0.152 |
| IFNg_GMCSF1 | -0.157 | 0.842 |
| Rv1432_day32 | 1.645 | -0.18 |
| Rv1565c_day32 | -0.218 | 0.058 |
| secA2_input | -0.194 | 1.268 |
| delta_Rv3594 | 0.376 | 1.199 |
| delta_Rv3717 | -1.828 | 0.559 |
| delta_Rv3811 | -0.528 | 0.0 |
| delta_Rv0954 | 0.318 | 2.305 |
| PonA1 | -1.895 | -2.069 |
| EccD1_KO | 0.148 | -0.635 |
| EspI_KO | 0.864 | -0.319 |
| PE35_KO | 0.957 | 1.076 |
| PPE68_KO | 1.241 | -0.038 |
| glycerol2 | 3.085 | 3.213 |
| lignocerate | 4.586 | 3.973 |
| oleate | 0.196 | 0.196 |
| phosphatidylcholine | 3.931 | 3.169 |
| acetate | 5.94 | 3.498 |
| glucAc | 4.505 | 3.418 |
| Rv0950ko | 0.1 | -0.151 |
| Rv1096ko | -0.504 | 0.0 |
| Rv3684ko | -1.88 | 0.789 |
| delta_otsA_trehalose | 4.101 | 2.628 |