Top 10 genes with highest correlation to Rv2190c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1836c/- | (cc=0.8008) | info on Rv1836c/- |
| Rv2696c/- | (cc=0.7379) | info on Rv2696c/- |
| Rv3207c/- | (cc=0.7377) | info on Rv3207c/- |
| Rv3818/- | (cc=0.7001) | info on Rv3818/- |
| Rv2553c/- | (cc=0.6903) | info on Rv2553c/- |
| Rv1821/secA2 | (cc=0.6858) | info on Rv1821/secA2 |
| Rv0309/- | (cc=0.6767) | info on Rv0309/- |
| Rv0929/pstC2 | (cc=0.6758) | info on Rv0929/pstC2 |
| Rv0820/phoT | (cc=0.6667) | info on Rv0820/phoT |
| Rv0431/- | (cc=0.6494) | info on Rv0431/- |
Correlation of Rv2190c/- with Rv0820/phoT
Normalized LFCs for Rv2190c/-:
(description and provenance of datasets)
| Rv2190c/- | Rv0820/phoT | |
| Fe_supp_jason_reseq | 2.516 | -2.636 |
| low_pH_jason_reseq | -0.221 | 1.788 |
| NO_jason_reseq | -3.877 | -3.079 |
| B6_jason_reseq | -0.596 | 0.638 |
| MHCII_jason_reseq | -0.565 | -0.194 |
| Isoniazid02 | 0.563 | -1.411 |
| Rifampicin4 | -3.541 | -5.902 |
| Ethambutol3 | -2.182 | -1.638 |
| Meropenem3 | -0.786 | -3.038 |
| Vancomycin16 | -4.51 | -3.573 |
| Rv2680_day32 | 2.417 | 4.269 |
| H37Rv_KO_MarP | -6.0 | -3.993 |
| hypoxia_3wks | -2.767 | -5.69 |
| hypoxia_6wks | -0.228 | 0.699 |
| glycerol | -0.098 | 4.839 |
| cholesterol | 2.214 | 6.0 |
| AJ | -1.276 | 2.269 |
| Bibs02 | 0.993 | 3.308 |
| Bibs02c | 1.306 | 3.603 |
| BL6 | 3.063 | 6.0 |
| BL6a | 2.749 | 6.0 |
| BXD01 | 2.595 | 6.0 |
| BXD010 | 2.438 | 6.0 |
| BXD011 | 2.323 | 6.0 |
| BXD03 | 2.42 | 6.0 |
| BXD04 | 2.446 | 6.0 |
| BXD05 | 3.337 | 6.0 |
| BXD06 | 3.167 | 6.0 |
| BXD07 | 2.933 | 6.0 |
| BXD08 | 2.286 | 6.0 |
| BXD09 | 3.087 | 6.0 |
| CAST | -1.088 | 5.082 |
| CCcont | 3.364 | 4.123 |
| DS01 | 1.001 | 2.01 |
| DS02 | 0.0 | 2.773 |
| DS04 | 1.359 | 3.114 |
| DS0c | 1.298 | 3.872 |
| GP01 | 1.498 | 5.604 |
| GP02 | -0.128 | 6.0 |
| GP0c | 1.031 | 6.0 |
| NOD | -1.061 | 2.423 |
| NZO | -1.263 | 1.412 |
| PWK | -0.786 | 3.862 |
| H37Rv_KO_CtpC | 2.295 | 5.235 |
| H37Rv_KO_CtpD | 1.805 | 3.389 |
| H37Rv_KO_Rv1272 | 2.512 | 6.0 |
| H37Rv_KO_SugABC | 1.815 | 4.259 |
| H37Rv_KO_MbtN | 4.046 | 6.0 |
| Trans05 | 2.172 | 6.0 |
| macrophage_unactivated | 0.076 | -2.885 |
| IL1 | 0.575 | -3.227 |
| Rapamycin | -0.23 | -3.643 |
| Tcell | -0.329 | -2.691 |
| GMCSF | 0.568 | -3.464 |
| IFNab | 1.103 | 2.905 |
| IFNg | 1.563 | -4.444 |
| IFNg_GMCSF1 | 0.575 | -5.411 |
| Rv1432_day32 | 2.996 | 6.0 |
| Rv1565c_day32 | 0.0 | 0.033 |
| secA2_input | -4.612 | -1.417 |
| delta_Rv3594 | 2.299 | 0.159 |
| delta_Rv3717 | 2.896 | 2.69 |
| delta_Rv3811 | 2.019 | 0.544 |
| delta_Rv0954 | 0.358 | -3.826 |
| PonA1 | -0.825 | -3.418 |
| EccD1_KO | -1.766 | -1.98 |
| EspI_KO | -1.634 | -2.085 |
| PE35_KO | -3.246 | -0.56 |
| PPE68_KO | -1.411 | -1.645 |
| glycerol2 | -0.531 | -5.208 |
| lignocerate | -0.462 | -2.53 |
| oleate | -0.537 | -3.933 |
| phosphatidylcholine | -0.531 | -3.148 |
| acetate | 1.15 | -0.667 |
| glucAc | 0.213 | -0.861 |
| Rv0950ko | -6.0 | -4.363 |
| Rv1096ko | -1.176 | 1.84 |
| Rv3684ko | -0.364 | 0.249 |
| delta_otsA_trehalose | 1.066 | -0.454 |