Top 10 genes with highest correlation to Rv2190c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1836c/- | (cc=0.8008) | info on Rv1836c/- |
| Rv2696c/- | (cc=0.7379) | info on Rv2696c/- |
| Rv3207c/- | (cc=0.7377) | info on Rv3207c/- |
| Rv3818/- | (cc=0.7001) | info on Rv3818/- |
| Rv2553c/- | (cc=0.6903) | info on Rv2553c/- |
| Rv1821/secA2 | (cc=0.6858) | info on Rv1821/secA2 |
| Rv0309/- | (cc=0.6767) | info on Rv0309/- |
| Rv0929/pstC2 | (cc=0.6758) | info on Rv0929/pstC2 |
| Rv0820/phoT | (cc=0.6667) | info on Rv0820/phoT |
| Rv0431/- | (cc=0.6494) | info on Rv0431/- |
Correlation of Rv2190c/- with Rv0431/-
Normalized LFCs for Rv2190c/-:
(description and provenance of datasets)
| Rv2190c/- | Rv0431/- | |
| Fe_supp_jason_reseq | 2.516 | 0.751 |
| low_pH_jason_reseq | -0.221 | 1.305 |
| NO_jason_reseq | -3.877 | -0.436 |
| B6_jason_reseq | -0.596 | 0.695 |
| MHCII_jason_reseq | -0.565 | 0.0 |
| Isoniazid02 | 0.563 | -2.043 |
| Rifampicin4 | -3.541 | -4.04 |
| Ethambutol3 | -2.182 | -0.832 |
| Meropenem3 | -0.786 | -2.146 |
| Vancomycin16 | -4.51 | -2.918 |
| Rv2680_day32 | 2.417 | 2.141 |
| H37Rv_KO_MarP | -6.0 | -3.466 |
| hypoxia_3wks | -2.767 | -0.439 |
| hypoxia_6wks | -0.228 | -0.075 |
| glycerol | -0.098 | -1.583 |
| cholesterol | 2.214 | 0.082 |
| AJ | -1.276 | -1.193 |
| Bibs02 | 0.993 | 1.477 |
| Bibs02c | 1.306 | 1.117 |
| BL6 | 3.063 | 1.154 |
| BL6a | 2.749 | 1.092 |
| BXD01 | 2.595 | 1.07 |
| BXD010 | 2.438 | 0.328 |
| BXD011 | 2.323 | 0.236 |
| BXD03 | 2.42 | -1.06 |
| BXD04 | 2.446 | 0.878 |
| BXD05 | 3.337 | 0.405 |
| BXD06 | 3.167 | 0.372 |
| BXD07 | 2.933 | 0.533 |
| BXD08 | 2.286 | 1.697 |
| BXD09 | 3.087 | 0.976 |
| CAST | -1.088 | -0.521 |
| CCcont | 3.364 | 2.676 |
| DS01 | 1.001 | 0.38 |
| DS02 | 0.0 | 0.403 |
| DS04 | 1.359 | 2.112 |
| DS0c | 1.298 | 1.724 |
| GP01 | 1.498 | -0.903 |
| GP02 | -0.128 | 0.603 |
| GP0c | 1.031 | -0.342 |
| NOD | -1.061 | -0.952 |
| NZO | -1.263 | -1.124 |
| PWK | -0.786 | -1.009 |
| H37Rv_KO_CtpC | 2.295 | 2.33 |
| H37Rv_KO_CtpD | 1.805 | -0.778 |
| H37Rv_KO_Rv1272 | 2.512 | -1.105 |
| H37Rv_KO_SugABC | 1.815 | 0.972 |
| H37Rv_KO_MbtN | 4.046 | 4.38 |
| Trans05 | 2.172 | -0.295 |
| macrophage_unactivated | 0.076 | 0.761 |
| IL1 | 0.575 | -0.742 |
| Rapamycin | -0.23 | -0.101 |
| Tcell | -0.329 | 1.378 |
| GMCSF | 0.568 | 2.081 |
| IFNab | 1.103 | -0.203 |
| IFNg | 1.563 | -0.567 |
| IFNg_GMCSF1 | 0.575 | -0.104 |
| Rv1432_day32 | 2.996 | 0.488 |
| Rv1565c_day32 | 0.0 | 0.55 |
| secA2_input | -4.612 | -2.829 |
| delta_Rv3594 | 2.299 | 0.84 |
| delta_Rv3717 | 2.896 | 1.47 |
| delta_Rv3811 | 2.019 | -0.086 |
| delta_Rv0954 | 0.358 | -1.55 |
| PonA1 | -0.825 | -0.608 |
| EccD1_KO | -1.766 | -2.611 |
| EspI_KO | -1.634 | -3.268 |
| PE35_KO | -3.246 | -1.978 |
| PPE68_KO | -1.411 | -1.635 |
| glycerol2 | -0.531 | 1.513 |
| lignocerate | -0.462 | 2.66 |
| oleate | -0.537 | -0.248 |
| phosphatidylcholine | -0.531 | 2.507 |
| acetate | 1.15 | 1.127 |
| glucAc | 0.213 | 1.49 |
| Rv0950ko | -6.0 | -3.401 |
| Rv1096ko | -1.176 | -3.402 |
| Rv3684ko | -0.364 | 2.021 |
| delta_otsA_trehalose | 1.066 | 0.081 |