Top 10 genes with highest correlation to Rv2144c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2190c/- | (cc=0.4953) | info on Rv2190c/- |
| Rv2696c/- | (cc=0.4887) | info on Rv2696c/- |
| Rv3818/- | (cc=0.4757) | info on Rv3818/- |
| Rv1836c/- | (cc=0.469) | info on Rv1836c/- |
| Rv1623c/cydA | (cc=0.4666) | info on Rv1623c/cydA |
| Rv0019c/fhaB | (cc=0.4603) | info on Rv0019c/fhaB |
| Rv1821/secA2 | (cc=0.4565) | info on Rv1821/secA2 |
| Rv1551/plsB1 | (cc=0.4482) | info on Rv1551/plsB1 |
| Rv3862c/whiB6 | (cc=0.4464) | info on Rv3862c/whiB6 |
| Rv3593/lpqF | (cc=0.4459) | info on Rv3593/lpqF |
Correlation of Rv2144c/- with Rv3593/lpqF
Normalized LFCs for Rv2144c/-:
(description and provenance of datasets)
| Rv2144c/- | Rv3593/lpqF | |
| Fe_supp_jason_reseq | 0.521 | 1.579 |
| low_pH_jason_reseq | 0.626 | 0.0 |
| NO_jason_reseq | -0.927 | 0.0 |
| B6_jason_reseq | -3.023 | 0.0 |
| MHCII_jason_reseq | 0.455 | 0.0 |
| Isoniazid02 | 0.029 | -0.156 |
| Rifampicin4 | -0.485 | -0.601 |
| Ethambutol3 | -1.29 | -0.27 |
| Meropenem3 | -0.875 | -0.581 |
| Vancomycin16 | -1.297 | -0.284 |
| Rv2680_day32 | -1.589 | 0.0 |
| H37Rv_KO_MarP | -2.815 | -3.419 |
| hypoxia_3wks | 1.156 | -0.55 |
| hypoxia_6wks | 0.764 | -0.288 |
| glycerol | 1.074 | 1.894 |
| cholesterol | 1.058 | -0.145 |
| AJ | -0.698 | 0.585 |
| Bibs02 | -0.634 | -0.183 |
| Bibs02c | -0.147 | -0.209 |
| BL6 | 0.877 | 0.781 |
| BL6a | -0.423 | 0.181 |
| BXD01 | 0.361 | 0.119 |
| BXD010 | -0.09 | -0.128 |
| BXD011 | -0.71 | 0.499 |
| BXD03 | 0.9 | -0.135 |
| BXD04 | 3.075 | 0.0 |
| BXD05 | -0.095 | 0.235 |
| BXD06 | 0.951 | -0.133 |
| BXD07 | 0.906 | 0.126 |
| BXD08 | -0.015 | -0.133 |
| BXD09 | 0.289 | 0.0 |
| CAST | 0.474 | -0.23 |
| CCcont | -0.105 | 0.852 |
| DS01 | -0.782 | -0.236 |
| DS02 | 0.922 | -0.217 |
| DS04 | -0.673 | 0.177 |
| DS0c | -2.19 | -0.217 |
| GP01 | -0.107 | -0.099 |
| GP02 | 1.782 | -0.083 |
| GP0c | 0.59 | -0.13 |
| NOD | -0.641 | -0.225 |
| NZO | -2.982 | 0.182 |
| PWK | -1.377 | -0.196 |
| H37Rv_KO_CtpC | 0.918 | 0.148 |
| H37Rv_KO_CtpD | 0.097 | 0.116 |
| H37Rv_KO_Rv1272 | 0.629 | 0.0 |
| H37Rv_KO_SugABC | -1.308 | 0.09 |
| H37Rv_KO_MbtN | 3.1 | 2.067 |
| Trans05 | 0.462 | 0.329 |
| macrophage_unactivated | 0.843 | 0.0 |
| IL1 | 0.231 | 0.0 |
| Rapamycin | -1.274 | 0.0 |
| Tcell | -1.124 | 0.0 |
| GMCSF | 2.289 | 0.0 |
| IFNab | 0.157 | 0.0 |
| IFNg | 2.528 | 0.0 |
| IFNg_GMCSF1 | 1.895 | 0.0 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.978 | 0.0 |
| secA2_input | -2.481 | -2.284 |
| delta_Rv3594 | 1.26 | 0.392 |
| delta_Rv3717 | 2.162 | 1.873 |
| delta_Rv3811 | -0.431 | -0.87 |
| delta_Rv0954 | 0.305 | -0.835 |
| PonA1 | -1.445 | -2.133 |
| EccD1_KO | 0.408 | 0.454 |
| EspI_KO | 0.374 | -0.918 |
| PE35_KO | -0.744 | -1.353 |
| PPE68_KO | -0.666 | 0.937 |
| glycerol2 | -1.24 | 0.0 |
| lignocerate | -1.292 | 0.712 |
| oleate | 0.084 | 0.0 |
| phosphatidylcholine | -1.769 | 0.193 |
| acetate | -0.155 | 0.437 |
| glucAc | -2.339 | 0.605 |
| Rv0950ko | -2.409 | -3.148 |
| Rv1096ko | -0.856 | -1.209 |
| Rv3684ko | 0.776 | 0.789 |
| delta_otsA_trehalose | -1.141 | -0.425 |