TnSeqCorr

Top 10 genes with highest correlation to Rv2144c/-:

update plotcorrelationlink to info on gene
Rv2190c/- (cc=0.4953) info on Rv2190c/-
Rv2696c/- (cc=0.4887) info on Rv2696c/-
Rv3818/- (cc=0.4757) info on Rv3818/-
Rv1836c/- (cc=0.469) info on Rv1836c/-
Rv1623c/cydA (cc=0.4666) info on Rv1623c/cydA
Rv0019c/fhaB (cc=0.4603) info on Rv0019c/fhaB
Rv1821/secA2 (cc=0.4565) info on Rv1821/secA2
Rv1551/plsB1 (cc=0.4482) info on Rv1551/plsB1
Rv3862c/whiB6 (cc=0.4464) info on Rv3862c/whiB6
Rv3593/lpqF (cc=0.4459) info on Rv3593/lpqF

Correlation of Rv2144c/- with Rv2190c/-

Normalized LFCs for Rv2144c/-:
(description and provenance of datasets)
Rv2144c/-Rv2190c/-
Fe_supp_jason_reseq

0.521

2.516

low_pH_jason_reseq

0.626

-0.221

NO_jason_reseq

-0.927

-3.877

B6_jason_reseq

-3.023

-0.596

MHCII_jason_reseq

0.455

-0.565

Isoniazid02

0.029

0.563

Rifampicin4

-0.485

-3.541

Ethambutol3

-1.29

-2.182

Meropenem3

-0.875

-0.786

Vancomycin16

-1.297

-4.51

Rv2680_day32

-1.589

2.417

H37Rv_KO_MarP

-2.815

-6.0

hypoxia_3wks

1.156

-2.767

hypoxia_6wks

0.764

-0.228

glycerol

1.074

-0.098

cholesterol

1.058

2.214

AJ

-0.698

-1.276

Bibs02

-0.634

0.993

Bibs02c

-0.147

1.306

BL6

0.877

3.063

BL6a

-0.423

2.749

BXD01

0.361

2.595

BXD010

-0.09

2.438

BXD011

-0.71

2.323

BXD03

0.9

2.42

BXD04

3.075

2.446

BXD05

-0.095

3.337

BXD06

0.951

3.167

BXD07

0.906

2.933

BXD08

-0.015

2.286

BXD09

0.289

3.087

CAST

0.474

-1.088

CCcont

-0.105

3.364

DS01

-0.782

1.001

DS02

0.922

0.0

DS04

-0.673

1.359

DS0c

-2.19

1.298

GP01

-0.107

1.498

GP02

1.782

-0.128

GP0c

0.59

1.031

NOD

-0.641

-1.061

NZO

-2.982

-1.263

PWK

-1.377

-0.786

H37Rv_KO_CtpC

0.918

2.295

H37Rv_KO_CtpD

0.097

1.805

H37Rv_KO_Rv1272

0.629

2.512

H37Rv_KO_SugABC

-1.308

1.815

H37Rv_KO_MbtN

3.1

4.046

Trans05

0.462

2.172

macrophage_unactivated

0.843

0.076

IL1

0.231

0.575

Rapamycin

-1.274

-0.23

Tcell

-1.124

-0.329

GMCSF

2.289

0.568

IFNab

0.157

1.103

IFNg

2.528

1.563

IFNg_GMCSF1

1.895

0.575

Rv1432_day32

0.0

2.996

Rv1565c_day32

-0.978

0.0

secA2_input

-2.481

-4.612

delta_Rv3594

1.26

2.299

delta_Rv3717

2.162

2.896

delta_Rv3811

-0.431

2.019

delta_Rv0954

0.305

0.358

PonA1

-1.445

-0.825

EccD1_KO

0.408

-1.766

EspI_KO

0.374

-1.634

PE35_KO

-0.744

-3.246

PPE68_KO

-0.666

-1.411

glycerol2

-1.24

-0.531

lignocerate

-1.292

-0.462

oleate

0.084

-0.537

phosphatidylcholine

-1.769

-0.531

acetate

-0.155

1.15

glucAc

-2.339

0.213

Rv0950ko

-2.409

-6.0

Rv1096ko

-0.856

-1.176

Rv3684ko

0.776

-0.364

delta_otsA_trehalose

-1.141

1.066