Top 10 genes with highest correlation to Rv2134c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0642c/mmaA4 | (cc=0.6957) | info on Rv0642c/mmaA4 |
| Rv2569c/- | (cc=0.6723) | info on Rv2569c/- |
| Rv2131c/cysQ | (cc=0.6678) | info on Rv2131c/cysQ |
| Rv0502/- | (cc=0.6622) | info on Rv0502/- |
| Rv0928/pstS3 | (cc=0.6403) | info on Rv0928/pstS3 |
| Rv0930/pstA1 | (cc=0.6348) | info on Rv0930/pstA1 |
| Rv0818/- | (cc=0.6344) | info on Rv0818/- |
| Rv0211/pckA | (cc=0.6324) | info on Rv0211/pckA |
| Rv2567/- | (cc=0.6302) | info on Rv2567/- |
| Rv2735c/- | (cc=0.625) | info on Rv2735c/- |
Correlation of Rv2134c/- with Rv0642c/mmaA4
Normalized LFCs for Rv2134c/-:
(description and provenance of datasets)
| Rv2134c/- | Rv0642c/mmaA4 | |
| Fe_supp_jason_reseq | 0.297 | 1.547 |
| low_pH_jason_reseq | 1.402 | 2.202 |
| NO_jason_reseq | -0.142 | 2.678 |
| B6_jason_reseq | -0.671 | -2.886 |
| MHCII_jason_reseq | -1.365 | -1.687 |
| Isoniazid02 | 1.529 | -1.333 |
| Rifampicin4 | 0.07 | -1.565 |
| Ethambutol3 | -0.032 | -2.112 |
| Meropenem3 | -0.25 | -1.815 |
| Vancomycin16 | -0.361 | -6.0 |
| Rv2680_day32 | 0.576 | -0.359 |
| H37Rv_KO_MarP | 0.164 | 0.571 |
| hypoxia_3wks | 0.79 | -0.937 |
| hypoxia_6wks | 0.449 | 3.548 |
| glycerol | 1.514 | 1.556 |
| cholesterol | 0.072 | -0.145 |
| AJ | 2.664 | 0.585 |
| Bibs02 | 0.135 | 0.717 |
| Bibs02c | 0.053 | 2.877 |
| BL6 | 1.098 | 2.544 |
| BL6a | 1.845 | 3.946 |
| BXD01 | 1.944 | 4.224 |
| BXD010 | 0.894 | 4.186 |
| BXD011 | 1.787 | 6.0 |
| BXD03 | 2.13 | 4.026 |
| BXD04 | 2.684 | 3.598 |
| BXD05 | 1.601 | 4.7 |
| BXD06 | 1.723 | 5.627 |
| BXD07 | 1.997 | 4.784 |
| BXD08 | 1.765 | 5.896 |
| BXD09 | 1.672 | 4.223 |
| CAST | -0.06 | -0.23 |
| CCcont | 2.265 | 5.608 |
| DS01 | -0.123 | -0.236 |
| DS02 | -0.635 | -0.217 |
| DS04 | 0.738 | 2.617 |
| DS0c | 0.707 | -0.217 |
| GP01 | 1.676 | 6.0 |
| GP02 | 0.119 | 3.274 |
| GP0c | 1.772 | 6.0 |
| NOD | 2.185 | 0.0 |
| NZO | 2.438 | -0.199 |
| PWK | 0.526 | 0.342 |
| H37Rv_KO_CtpC | 0.646 | 4.153 |
| H37Rv_KO_CtpD | 2.104 | 1.805 |
| H37Rv_KO_Rv1272 | 0.767 | 4.035 |
| H37Rv_KO_SugABC | 0.539 | 1.362 |
| H37Rv_KO_MbtN | 2.6 | 6.0 |
| Trans05 | 2.043 | 4.713 |
| macrophage_unactivated | 0.297 | -3.595 |
| IL1 | -1.089 | 0.297 |
| Rapamycin | -0.417 | -0.706 |
| Tcell | 0.052 | -0.124 |
| GMCSF | -0.129 | -3.126 |
| IFNab | 1.376 | -0.883 |
| IFNg | -0.818 | -4.153 |
| IFNg_GMCSF1 | -0.657 | -5.477 |
| Rv1432_day32 | -0.442 | -0.98 |
| Rv1565c_day32 | -0.518 | -1.21 |
| secA2_input | -1.199 | 0.424 |
| delta_Rv3594 | 1.104 | 1.768 |
| delta_Rv3717 | 0.985 | 3.284 |
| delta_Rv3811 | 1.38 | 1.646 |
| delta_Rv0954 | 1.147 | -2.158 |
| PonA1 | -1.337 | -6.0 |
| EccD1_KO | -0.276 | -6.0 |
| EspI_KO | -0.653 | -6.0 |
| PE35_KO | -0.586 | -6.0 |
| PPE68_KO | -0.921 | -6.0 |
| glycerol2 | -0.214 | -1.684 |
| lignocerate | -0.725 | -1.464 |
| oleate | -1.345 | -1.167 |
| phosphatidylcholine | -1.246 | -1.683 |
| acetate | 0.118 | -1.561 |
| glucAc | -0.055 | -0.451 |
| Rv0950ko | 0.0 | -3.98 |
| Rv1096ko | -1.71 | -3.906 |
| Rv3684ko | -2.122 | -1.628 |
| delta_otsA_trehalose | -0.164 | -0.595 |