Top 10 genes with highest correlation to Rv2113/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0159c/PE3 | (cc=0.856) | info on Rv0159c/PE3 |
| Rv1817/- | (cc=0.8479) | info on Rv1817/- |
| Rv3815c/- | (cc=0.7418) | info on Rv3815c/- |
| Rv0453/PPE11 | (cc=0.7248) | info on Rv0453/PPE11 |
| Rv2848c/cobB | (cc=0.7197) | info on Rv2848c/cobB |
| Rv2822c/- | (cc=0.6508) | info on Rv2822c/- |
| Rv3685c/cyp137 | (cc=0.5386) | info on Rv3685c/cyp137 |
| Rv3862c/whiB6 | (cc=0.5193) | info on Rv3862c/whiB6 |
| Rv1021/- | (cc=0.4871) | info on Rv1021/- |
| Rv2339/mmpL9 | (cc=0.4851) | info on Rv2339/mmpL9 |
Correlation of Rv2113/- with Rv2822c/-
Normalized LFCs for Rv2113/-:
(description and provenance of datasets)
| Rv2113/- | Rv2822c/- | |
| Fe_supp_jason_reseq | 0.922 | -0.535 |
| low_pH_jason_reseq | -1.379 | -0.621 |
| NO_jason_reseq | -0.559 | -0.753 |
| B6_jason_reseq | -1.249 | -0.852 |
| MHCII_jason_reseq | -0.531 | -0.363 |
| Isoniazid02 | -1.043 | 1.998 |
| Rifampicin4 | 0.406 | -0.046 |
| Ethambutol3 | 0.657 | -0.299 |
| Meropenem3 | -0.462 | -0.32 |
| Vancomycin16 | -0.231 | 0.268 |
| Rv2680_day32 | -0.825 | -0.687 |
| H37Rv_KO_MarP | 0.159 | -0.196 |
| hypoxia_3wks | -0.012 | 0.582 |
| hypoxia_6wks | -0.568 | -0.338 |
| glycerol | 0.237 | 0.206 |
| cholesterol | -0.405 | 0.528 |
| AJ | 0.356 | -0.198 |
| Bibs02 | -0.372 | -0.109 |
| Bibs02c | -0.209 | 0.364 |
| BL6 | 0.418 | -0.479 |
| BL6a | 0.169 | -0.135 |
| BXD01 | -0.106 | 0.199 |
| BXD010 | -0.113 | -0.741 |
| BXD011 | 0.753 | -0.632 |
| BXD03 | 0.123 | 0.326 |
| BXD04 | -0.166 | -1.13 |
| BXD05 | 0.301 | -0.964 |
| BXD06 | 0.224 | -0.717 |
| BXD07 | 0.171 | -0.515 |
| BXD08 | 0.265 | -0.91 |
| BXD09 | 0.103 | -0.625 |
| CAST | -0.828 | 0.702 |
| CCcont | 0.169 | -0.169 |
| DS01 | -0.335 | -0.267 |
| DS02 | 0.098 | 0.106 |
| DS04 | -0.218 | -1.041 |
| DS0c | 0.11 | 0.423 |
| GP01 | 0.072 | -0.247 |
| GP02 | -0.087 | -0.435 |
| GP0c | 0.142 | 0.083 |
| NOD | -0.404 | 0.391 |
| NZO | -0.604 | 0.727 |
| PWK | -0.409 | -0.151 |
| H37Rv_KO_CtpC | 0.148 | 0.454 |
| H37Rv_KO_CtpD | 0.72 | -1.563 |
| H37Rv_KO_Rv1272 | 0.551 | 0.133 |
| H37Rv_KO_SugABC | 1.132 | 1.101 |
| H37Rv_KO_MbtN | 0.42 | -0.539 |
| Trans05 | 0.939 | 0.307 |
| macrophage_unactivated | 1.143 | 1.171 |
| IL1 | 2.886 | 1.812 |
| Rapamycin | 3.167 | 1.967 |
| Tcell | -6.0 | -4.412 |
| GMCSF | 2.756 | 1.679 |
| IFNab | 2.663 | 2.428 |
| IFNg | 2.905 | 1.898 |
| IFNg_GMCSF1 | 2.963 | 2.231 |
| Rv1432_day32 | 0.322 | 0.179 |
| Rv1565c_day32 | 1.531 | -0.622 |
| secA2_input | 0.128 | -0.308 |
| delta_Rv3594 | -0.337 | 1.222 |
| delta_Rv3717 | -0.154 | -0.747 |
| delta_Rv3811 | -0.312 | 0.805 |
| delta_Rv0954 | 0.181 | 0.291 |
| PonA1 | -0.268 | 0.384 |
| EccD1_KO | 0.148 | -1.322 |
| EspI_KO | 0.222 | 0.297 |
| PE35_KO | -0.286 | 1.07 |
| PPE68_KO | -0.147 | 1.174 |
| glycerol2 | 0.894 | 0.143 |
| lignocerate | 0.616 | 0.095 |
| oleate | 1.331 | 0.145 |
| phosphatidylcholine | 0.999 | 0.2 |
| acetate | 0.342 | -0.136 |
| glucAc | -0.082 | -0.206 |
| Rv0950ko | 0.25 | -1.423 |
| Rv1096ko | -0.13 | -1.086 |
| Rv3684ko | -0.233 | -0.806 |
| delta_otsA_trehalose | 0.537 | -0.711 |