Top 10 genes with highest correlation to Rv2113/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0159c/PE3 | (cc=0.856) | info on Rv0159c/PE3 |
| Rv1817/- | (cc=0.8479) | info on Rv1817/- |
| Rv3815c/- | (cc=0.7418) | info on Rv3815c/- |
| Rv0453/PPE11 | (cc=0.7248) | info on Rv0453/PPE11 |
| Rv2848c/cobB | (cc=0.7197) | info on Rv2848c/cobB |
| Rv2822c/- | (cc=0.6508) | info on Rv2822c/- |
| Rv3685c/cyp137 | (cc=0.5386) | info on Rv3685c/cyp137 |
| Rv3862c/whiB6 | (cc=0.5193) | info on Rv3862c/whiB6 |
| Rv1021/- | (cc=0.4871) | info on Rv1021/- |
| Rv2339/mmpL9 | (cc=0.4851) | info on Rv2339/mmpL9 |
Correlation of Rv2113/- with Rv0453/PPE11
Normalized LFCs for Rv2113/-:
(description and provenance of datasets)
| Rv2113/- | Rv0453/PPE11 | |
| Fe_supp_jason_reseq | 0.922 | 0.316 |
| low_pH_jason_reseq | -1.379 | -1.062 |
| NO_jason_reseq | -0.559 | -0.339 |
| B6_jason_reseq | -1.249 | 0.514 |
| MHCII_jason_reseq | -0.531 | 0.068 |
| Isoniazid02 | -1.043 | 0.535 |
| Rifampicin4 | 0.406 | -0.119 |
| Ethambutol3 | 0.657 | 0.539 |
| Meropenem3 | -0.462 | 0.121 |
| Vancomycin16 | -0.231 | 0.0 |
| Rv2680_day32 | -0.825 | -0.072 |
| H37Rv_KO_MarP | 0.159 | 0.315 |
| hypoxia_3wks | -0.012 | 0.144 |
| hypoxia_6wks | -0.568 | -0.265 |
| glycerol | 0.237 | -0.607 |
| cholesterol | -0.405 | -0.039 |
| AJ | 0.356 | -0.116 |
| Bibs02 | -0.372 | 0.087 |
| Bibs02c | -0.209 | 0.294 |
| BL6 | 0.418 | -0.962 |
| BL6a | 0.169 | 0.136 |
| BXD01 | -0.106 | -0.407 |
| BXD010 | -0.113 | -0.788 |
| BXD011 | 0.753 | -0.361 |
| BXD03 | 0.123 | 0.029 |
| BXD04 | -0.166 | -0.016 |
| BXD05 | 0.301 | -0.628 |
| BXD06 | 0.224 | -0.604 |
| BXD07 | 0.171 | -0.527 |
| BXD08 | 0.265 | -0.251 |
| BXD09 | 0.103 | -0.473 |
| CAST | -0.828 | 0.342 |
| CCcont | 0.169 | -1.136 |
| DS01 | -0.335 | 0.313 |
| DS02 | 0.098 | 0.605 |
| DS04 | -0.218 | 0.474 |
| DS0c | 0.11 | 0.167 |
| GP01 | 0.072 | -0.338 |
| GP02 | -0.087 | -0.053 |
| GP0c | 0.142 | -0.953 |
| NOD | -0.404 | -0.185 |
| NZO | -0.604 | -0.314 |
| PWK | -0.409 | 0.222 |
| H37Rv_KO_CtpC | 0.148 | -0.518 |
| H37Rv_KO_CtpD | 0.72 | -0.069 |
| H37Rv_KO_Rv1272 | 0.551 | 0.359 |
| H37Rv_KO_SugABC | 1.132 | 0.188 |
| H37Rv_KO_MbtN | 0.42 | 0.237 |
| Trans05 | 0.939 | 0.372 |
| macrophage_unactivated | 1.143 | 0.338 |
| IL1 | 2.886 | 1.106 |
| Rapamycin | 3.167 | 1.28 |
| Tcell | -6.0 | -3.421 |
| GMCSF | 2.756 | 1.708 |
| IFNab | 2.663 | 0.716 |
| IFNg | 2.905 | 1.799 |
| IFNg_GMCSF1 | 2.963 | 1.31 |
| Rv1432_day32 | 0.322 | -0.185 |
| Rv1565c_day32 | 1.531 | -0.169 |
| secA2_input | 0.128 | -0.319 |
| delta_Rv3594 | -0.337 | -0.15 |
| delta_Rv3717 | -0.154 | -0.458 |
| delta_Rv3811 | -0.312 | -0.574 |
| delta_Rv0954 | 0.181 | -0.707 |
| PonA1 | -0.268 | -0.613 |
| EccD1_KO | 0.148 | -0.257 |
| EspI_KO | 0.222 | -0.722 |
| PE35_KO | -0.286 | -0.688 |
| PPE68_KO | -0.147 | -0.614 |
| glycerol2 | 0.894 | 0.363 |
| lignocerate | 0.616 | -0.062 |
| oleate | 1.331 | 0.635 |
| phosphatidylcholine | 0.999 | 0.38 |
| acetate | 0.342 | -0.527 |
| glucAc | -0.082 | -0.797 |
| Rv0950ko | 0.25 | 0.302 |
| Rv1096ko | -0.13 | -0.431 |
| Rv3684ko | -0.233 | 0.259 |
| delta_otsA_trehalose | 0.537 | -0.974 |