Top 10 genes with highest correlation to Rv2087/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2270/lppN | (cc=0.5536) | info on Rv2270/lppN |
| Rv3768/- | (cc=0.5282) | info on Rv3768/- |
| Rv1208/gpgS | (cc=0.5178) | info on Rv1208/gpgS |
| Rv2042c/- | (cc=0.515) | info on Rv2042c/- |
| Rv0692/- | (cc=0.5137) | info on Rv0692/- |
| Rv2652c/- | (cc=0.504) | info on Rv2652c/- |
| Rv2344c/dgt | (cc=0.5032) | info on Rv2344c/dgt |
| Rv1436/gap | (cc=0.503) | info on Rv1436/gap |
| Rv1236/sugA | (cc=0.5012) | info on Rv1236/sugA |
| Rv1023/eno | (cc=0.4919) | info on Rv1023/eno |
Correlation of Rv2087/- with Rv2344c/dgt
Normalized LFCs for Rv2087/-:
(description and provenance of datasets)
| Rv2087/- | Rv2344c/dgt | |
| Fe_supp_jason_reseq | 2.344 | 1.834 |
| low_pH_jason_reseq | 0.0 | -1.35 |
| NO_jason_reseq | 0.0 | -0.378 |
| B6_jason_reseq | 0.0 | -0.964 |
| MHCII_jason_reseq | 0.0 | -0.849 |
| Isoniazid02 | 0.089 | 1.154 |
| Rifampicin4 | 1.289 | 0.891 |
| Ethambutol3 | 2.23 | 1.079 |
| Meropenem3 | 2.705 | 0.754 |
| Vancomycin16 | -0.17 | -0.374 |
| Rv2680_day32 | 0.335 | -0.698 |
| H37Rv_KO_MarP | 0.0 | -1.082 |
| hypoxia_3wks | 0.0 | 0.475 |
| hypoxia_6wks | 2.955 | 0.342 |
| glycerol | -0.709 | 0.821 |
| cholesterol | 0.381 | -0.223 |
| AJ | 0.0 | -1.506 |
| Bibs02 | -0.642 | 0.348 |
| Bibs02c | 1.353 | -2.004 |
| BL6 | -0.439 | -1.24 |
| BL6a | -0.696 | -2.03 |
| BXD01 | -0.458 | -1.639 |
| BXD010 | -0.45 | -1.728 |
| BXD011 | -0.448 | -1.845 |
| BXD03 | -0.475 | -1.484 |
| BXD04 | -0.434 | -1.928 |
| BXD05 | -0.339 | -1.528 |
| BXD06 | -0.469 | -1.739 |
| BXD07 | -0.486 | -1.238 |
| BXD08 | -0.467 | -1.732 |
| BXD09 | -0.494 | -2.036 |
| CAST | 0.0 | -1.438 |
| CCcont | -0.24 | 0.468 |
| DS01 | -0.83 | -1.312 |
| DS02 | -0.764 | -1.879 |
| DS04 | -0.15 | -1.619 |
| DS0c | -0.762 | -0.729 |
| GP01 | 0.368 | -1.012 |
| GP02 | 1.656 | 0.269 |
| GP0c | 1.835 | -0.51 |
| NOD | 2.151 | -0.347 |
| NZO | -0.701 | -0.6 |
| PWK | -0.494 | -0.769 |
| H37Rv_KO_CtpC | -0.571 | -0.353 |
| H37Rv_KO_CtpD | -0.098 | -1.02 |
| H37Rv_KO_Rv1272 | 1.264 | -0.881 |
| H37Rv_KO_SugABC | -0.159 | -0.596 |
| H37Rv_KO_MbtN | 1.968 | 0.261 |
| Trans05 | 0.678 | -0.88 |
| macrophage_unactivated | 1.531 | 0.559 |
| IL1 | 0.0 | -0.389 |
| Rapamycin | 2.081 | 0.0 |
| Tcell | 0.0 | -0.209 |
| GMCSF | 1.281 | 0.082 |
| IFNab | 0.417 | 0.0 |
| IFNg | 0.0 | 0.083 |
| IFNg_GMCSF1 | 1.838 | 0.192 |
| Rv1432_day32 | 0.0 | -0.271 |
| Rv1565c_day32 | 0.0 | 0.611 |
| secA2_input | -2.248 | -0.415 |
| delta_Rv3594 | 0.684 | 0.751 |
| delta_Rv3717 | 1.939 | -0.347 |
| delta_Rv3811 | 1.228 | 0.641 |
| delta_Rv0954 | -0.375 | 0.322 |
| PonA1 | 1.333 | 0.893 |
| EccD1_KO | 2.897 | 0.434 |
| EspI_KO | 1.292 | 0.214 |
| PE35_KO | 3.436 | 0.303 |
| PPE68_KO | 5.071 | 1.049 |
| glycerol2 | 0.0 | -2.519 |
| lignocerate | 0.0 | -2.612 |
| oleate | 0.0 | -2.362 |
| phosphatidylcholine | 0.0 | -2.944 |
| acetate | 0.0 | 0.379 |
| glucAc | 0.0 | 0.577 |
| Rv0950ko | 1.809 | -0.32 |
| Rv1096ko | 0.0 | -0.896 |
| Rv3684ko | -0.832 | -0.576 |
| delta_otsA_trehalose | 0.382 | -0.4 |