Top 10 genes with highest correlation to Rv2051c/ppm1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2869c/rip | (cc=0.6433) | info on Rv2869c/rip |
| Rv1159/pimE | (cc=0.6218) | info on Rv1159/pimE |
| Rv3139/fadE24 | (cc=0.6099) | info on Rv3139/fadE24 |
| Rv3283/sseA | (cc=0.6021) | info on Rv3283/sseA |
| Rv1638/uvrA | (cc=0.5959) | info on Rv1638/uvrA |
| Rv3717/- | (cc=0.5933) | info on Rv3717/- |
| Rv2737c/recA | (cc=0.5873) | info on Rv2737c/recA |
| Rv0983/pepD | (cc=0.5852) | info on Rv0983/pepD |
| Rv1592c/- | (cc=0.5743) | info on Rv1592c/- |
| Rv2170/- | (cc=0.5656) | info on Rv2170/- |
Correlation of Rv2051c/ppm1 with Rv3717/-
Normalized LFCs for Rv2051c/ppm1:
(description and provenance of datasets)
| Rv2051c/ppm1 | Rv3717/- | |
| Fe_supp_jason_reseq | 3.73 | -0.519 |
| low_pH_jason_reseq | -1.474 | -1.932 |
| NO_jason_reseq | -0.339 | -0.281 |
| B6_jason_reseq | -1.713 | -2.804 |
| MHCII_jason_reseq | -1.194 | -1.818 |
| Isoniazid02 | -1.961 | 1.168 |
| Rifampicin4 | -3.476 | -6.0 |
| Ethambutol3 | -1.037 | -0.287 |
| Meropenem3 | -0.379 | -2.356 |
| Vancomycin16 | -3.94 | -6.0 |
| Rv2680_day32 | -3.375 | -3.189 |
| H37Rv_KO_MarP | -4.593 | -0.351 |
| hypoxia_3wks | -3.166 | -3.194 |
| hypoxia_6wks | -2.328 | -2.443 |
| glycerol | 1.627 | -0.56 |
| cholesterol | 1.338 | 0.614 |
| AJ | -1.76 | -1.849 |
| Bibs02 | -0.062 | 1.507 |
| Bibs02c | -1.446 | -0.781 |
| BL6 | -0.509 | -0.497 |
| BL6a | -1.125 | -0.891 |
| BXD01 | -1.183 | -1.981 |
| BXD010 | -0.727 | -1.612 |
| BXD011 | -0.8 | -0.923 |
| BXD03 | -0.094 | -0.573 |
| BXD04 | -0.855 | -1.032 |
| BXD05 | -0.764 | -1.072 |
| BXD06 | -1.213 | -1.114 |
| BXD07 | -0.708 | -1.451 |
| BXD08 | -1.208 | -1.527 |
| BXD09 | -1.168 | -1.346 |
| CAST | -1.446 | -3.68 |
| CCcont | 2.086 | 1.67 |
| DS01 | -0.53 | 1.732 |
| DS02 | 0.21 | 1.068 |
| DS04 | -0.888 | -0.822 |
| DS0c | 0.943 | 0.79 |
| GP01 | -1.167 | -0.617 |
| GP02 | -0.984 | -1.33 |
| GP0c | -0.899 | -1.136 |
| NOD | -1.149 | -2.579 |
| NZO | -1.812 | -1.743 |
| PWK | -0.524 | -2.585 |
| H37Rv_KO_CtpC | 1.204 | 0.85 |
| H37Rv_KO_CtpD | 0.402 | 0.085 |
| H37Rv_KO_Rv1272 | -0.44 | -1.548 |
| H37Rv_KO_SugABC | 0.211 | -0.906 |
| H37Rv_KO_MbtN | -0.149 | -0.783 |
| Trans05 | -0.469 | -1.141 |
| macrophage_unactivated | 0.65 | -0.104 |
| IL1 | -0.914 | -0.685 |
| Rapamycin | 0.328 | 0.822 |
| Tcell | 0.515 | -0.753 |
| GMCSF | -0.636 | 0.636 |
| IFNab | 0.623 | 1.013 |
| IFNg | -0.644 | -1.109 |
| IFNg_GMCSF1 | 0.17 | -2.049 |
| Rv1432_day32 | -3.609 | -2.854 |
| Rv1565c_day32 | 0.0 | -1.515 |
| secA2_input | 2.099 | 1.677 |
| delta_Rv3594 | -2.155 | 0.456 |
| delta_Rv3717 | -2.639 | -3.861 |
| delta_Rv3811 | -2.501 | 0.378 |
| delta_Rv0954 | 1.193 | -0.142 |
| PonA1 | 2.433 | 1.084 |
| EccD1_KO | 0.477 | -0.355 |
| EspI_KO | 0.525 | -0.308 |
| PE35_KO | -0.543 | -0.026 |
| PPE68_KO | -0.141 | -0.227 |
| glycerol2 | -2.149 | -0.437 |
| lignocerate | -2.276 | -0.207 |
| oleate | -4.353 | -1.418 |
| phosphatidylcholine | -0.892 | -1.188 |
| acetate | 0.244 | 0.74 |
| glucAc | -0.209 | 0.429 |
| Rv0950ko | -0.072 | -0.175 |
| Rv1096ko | -0.072 | 0.947 |
| Rv3684ko | 0.157 | 0.029 |
| delta_otsA_trehalose | 0.111 | -0.101 |