Top 10 genes with highest correlation to Rv1990A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2039c/- | (cc=0.5673) | info on Rv2039c/- |
| Rv2929/- | (cc=0.5487) | info on Rv2929/- |
| Rv0235c/- | (cc=0.5038) | info on Rv0235c/- |
| Rv1076/lipU | (cc=0.5025) | info on Rv1076/lipU |
| Rv0973c/accA2 | (cc=0.4986) | info on Rv0973c/accA2 |
| Rv2044c/- | (cc=0.4923) | info on Rv2044c/- |
| Rv2677c/hemY | (cc=0.4746) | info on Rv2677c/hemY |
| Rv3545c/cyp125 | (cc=0.4737) | info on Rv3545c/cyp125 |
| Rv2575/- | (cc=0.4711) | info on Rv2575/- |
| Rv1870c/- | (cc=0.4663) | info on Rv1870c/- |
Correlation of Rv1990A/- with Rv2575/-
Normalized LFCs for Rv1990A/-:
(description and provenance of datasets)
| Rv1990A/- | Rv2575/- | |
| Fe_supp_jason_reseq | 0.0 | -0.357 |
| low_pH_jason_reseq | -0.664 | 0.176 |
| NO_jason_reseq | 0.189 | 0.373 |
| B6_jason_reseq | -1.972 | -1.261 |
| MHCII_jason_reseq | -1.757 | -0.524 |
| Isoniazid02 | 3.843 | 0.285 |
| Rifampicin4 | 0.344 | -0.398 |
| Ethambutol3 | 0.426 | 0.838 |
| Meropenem3 | -0.214 | 0.375 |
| Vancomycin16 | 0.109 | 0.387 |
| Rv2680_day32 | -2.044 | -1.044 |
| H37Rv_KO_MarP | 0.234 | -0.761 |
| hypoxia_3wks | 0.156 | 1.081 |
| hypoxia_6wks | -0.013 | 1.52 |
| glycerol | -0.524 | -1.204 |
| cholesterol | -1.205 | -0.156 |
| AJ | -0.718 | 0.103 |
| Bibs02 | -3.247 | -0.391 |
| Bibs02c | -1.288 | -0.476 |
| BL6 | 0.304 | 1.269 |
| BL6a | 0.522 | 0.618 |
| BXD01 | 1.7 | 1.404 |
| BXD010 | 1.82 | 0.992 |
| BXD011 | 0.735 | 2.068 |
| BXD03 | 0.678 | 0.728 |
| BXD04 | 0.62 | 1.434 |
| BXD05 | 1.24 | 0.724 |
| BXD06 | 0.582 | 0.913 |
| BXD07 | 1.093 | 1.138 |
| BXD08 | 0.602 | 1.16 |
| BXD09 | 0.977 | 1.548 |
| CAST | -0.415 | -0.624 |
| CCcont | 0.528 | 1.381 |
| DS01 | 0.202 | -0.505 |
| DS02 | -0.729 | -1.95 |
| DS04 | -1.876 | -0.526 |
| DS0c | 0.198 | -0.787 |
| GP01 | -0.48 | -0.082 |
| GP02 | 1.816 | 0.804 |
| GP0c | 0.506 | 0.395 |
| NOD | 1.196 | 0.399 |
| NZO | -1.37 | 0.0 |
| PWK | -0.728 | -0.365 |
| H37Rv_KO_CtpC | 1.267 | -0.302 |
| H37Rv_KO_CtpD | -0.307 | 1.574 |
| H37Rv_KO_Rv1272 | 0.905 | 1.069 |
| H37Rv_KO_SugABC | 1.82 | 2.023 |
| H37Rv_KO_MbtN | -0.511 | -0.844 |
| Trans05 | 1.228 | 0.418 |
| macrophage_unactivated | 1.701 | 0.205 |
| IL1 | 0.383 | 1.017 |
| Rapamycin | 0.491 | 0.491 |
| Tcell | 0.16 | 0.241 |
| GMCSF | -0.417 | 0.533 |
| IFNab | 0.076 | 0.085 |
| IFNg | 0.053 | 0.473 |
| IFNg_GMCSF1 | -0.242 | -0.308 |
| Rv1432_day32 | 0.18 | 0.029 |
| Rv1565c_day32 | 0.0 | 0.319 |
| secA2_input | 1.014 | -0.1 |
| delta_Rv3594 | 0.333 | 0.286 |
| delta_Rv3717 | 0.313 | -0.434 |
| delta_Rv3811 | 0.744 | -0.022 |
| delta_Rv0954 | -0.37 | 1.105 |
| PonA1 | -0.247 | -0.354 |
| EccD1_KO | -0.312 | -1.023 |
| EspI_KO | -0.111 | -0.171 |
| PE35_KO | 0.545 | 0.0 |
| PPE68_KO | -0.797 | -0.656 |
| glycerol2 | 0.722 | 0.429 |
| lignocerate | 0.781 | 0.688 |
| oleate | 0.98 | 0.014 |
| phosphatidylcholine | 0.79 | 0.891 |
| acetate | 0.617 | 0.884 |
| glucAc | 0.333 | 0.515 |
| Rv0950ko | -0.054 | 0.166 |
| Rv1096ko | 0.573 | 0.042 |
| Rv3684ko | -0.16 | -0.046 |
| delta_otsA_trehalose | 0.07 | 3.259 |