Top 10 genes with highest correlation to Rv1990A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2039c/- | (cc=0.5673) | info on Rv2039c/- |
| Rv2929/- | (cc=0.5487) | info on Rv2929/- |
| Rv0235c/- | (cc=0.5038) | info on Rv0235c/- |
| Rv1076/lipU | (cc=0.5025) | info on Rv1076/lipU |
| Rv0973c/accA2 | (cc=0.4986) | info on Rv0973c/accA2 |
| Rv2044c/- | (cc=0.4923) | info on Rv2044c/- |
| Rv2677c/hemY | (cc=0.4746) | info on Rv2677c/hemY |
| Rv3545c/cyp125 | (cc=0.4737) | info on Rv3545c/cyp125 |
| Rv2575/- | (cc=0.4711) | info on Rv2575/- |
| Rv1870c/- | (cc=0.4663) | info on Rv1870c/- |
Correlation of Rv1990A/- with Rv2039c/-
Normalized LFCs for Rv1990A/-:
(description and provenance of datasets)
| Rv1990A/- | Rv2039c/- | |
| Fe_supp_jason_reseq | 0.0 | 0.128 |
| low_pH_jason_reseq | -0.664 | 0.035 |
| NO_jason_reseq | 0.189 | -0.929 |
| B6_jason_reseq | -1.972 | -0.955 |
| MHCII_jason_reseq | -1.757 | -1.376 |
| Isoniazid02 | 3.843 | 1.442 |
| Rifampicin4 | 0.344 | -0.203 |
| Ethambutol3 | 0.426 | -0.342 |
| Meropenem3 | -0.214 | -0.625 |
| Vancomycin16 | 0.109 | 0.324 |
| Rv2680_day32 | -2.044 | 0.0 |
| H37Rv_KO_MarP | 0.234 | -0.151 |
| hypoxia_3wks | 0.156 | -0.124 |
| hypoxia_6wks | -0.013 | 0.33 |
| glycerol | -0.524 | -0.945 |
| cholesterol | -1.205 | -0.852 |
| AJ | -0.718 | -0.069 |
| Bibs02 | -3.247 | -2.448 |
| Bibs02c | -1.288 | -2.145 |
| BL6 | 0.304 | 0.468 |
| BL6a | 0.522 | 0.367 |
| BXD01 | 1.7 | 0.16 |
| BXD010 | 1.82 | 0.019 |
| BXD011 | 0.735 | 0.502 |
| BXD03 | 0.678 | 0.0 |
| BXD04 | 0.62 | 1.095 |
| BXD05 | 1.24 | 0.112 |
| BXD06 | 0.582 | 0.43 |
| BXD07 | 1.093 | 0.323 |
| BXD08 | 0.602 | 0.181 |
| BXD09 | 0.977 | 0.541 |
| CAST | -0.415 | -1.355 |
| CCcont | 0.528 | 0.633 |
| DS01 | 0.202 | -0.9 |
| DS02 | -0.729 | -1.512 |
| DS04 | -1.876 | -1.405 |
| DS0c | 0.198 | -0.53 |
| GP01 | -0.48 | 0.437 |
| GP02 | 1.816 | 0.914 |
| GP0c | 0.506 | 0.363 |
| NOD | 1.196 | -0.099 |
| NZO | -1.37 | -0.487 |
| PWK | -0.728 | -0.179 |
| H37Rv_KO_CtpC | 1.267 | -0.2 |
| H37Rv_KO_CtpD | -0.307 | -1.116 |
| H37Rv_KO_Rv1272 | 0.905 | 0.192 |
| H37Rv_KO_SugABC | 1.82 | 0.0 |
| H37Rv_KO_MbtN | -0.511 | 0.204 |
| Trans05 | 1.228 | 0.732 |
| macrophage_unactivated | 1.701 | -0.628 |
| IL1 | 0.383 | 0.549 |
| Rapamycin | 0.491 | -0.865 |
| Tcell | 0.16 | -0.521 |
| GMCSF | -0.417 | -1.056 |
| IFNab | 0.076 | -0.484 |
| IFNg | 0.053 | 0.412 |
| IFNg_GMCSF1 | -0.242 | 0.418 |
| Rv1432_day32 | 0.18 | -0.038 |
| Rv1565c_day32 | 0.0 | -0.877 |
| secA2_input | 1.014 | -1.047 |
| delta_Rv3594 | 0.333 | 0.278 |
| delta_Rv3717 | 0.313 | 0.131 |
| delta_Rv3811 | 0.744 | 0.271 |
| delta_Rv0954 | -0.37 | -0.961 |
| PonA1 | -0.247 | 0.073 |
| EccD1_KO | -0.312 | -0.135 |
| EspI_KO | -0.111 | -1.842 |
| PE35_KO | 0.545 | -0.12 |
| PPE68_KO | -0.797 | 0.25 |
| glycerol2 | 0.722 | -0.21 |
| lignocerate | 0.781 | -0.079 |
| oleate | 0.98 | -0.068 |
| phosphatidylcholine | 0.79 | -0.261 |
| acetate | 0.617 | -0.221 |
| glucAc | 0.333 | -0.05 |
| Rv0950ko | -0.054 | -0.537 |
| Rv1096ko | 0.573 | 1.436 |
| Rv3684ko | -0.16 | 1.041 |
| delta_otsA_trehalose | 0.07 | 0.376 |