Top 10 genes with highest correlation to Rv1973/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3038c/- | (cc=0.6239) | info on Rv3038c/- |
| Rv1276c/- | (cc=0.601) | info on Rv1276c/- |
| Rv0737/- | (cc=0.5896) | info on Rv0737/- |
| Rv2014/- | (cc=0.5892) | info on Rv2014/- |
| Rv0228/- | (cc=0.585) | info on Rv0228/- |
| Rv0449c/- | (cc=0.5605) | info on Rv0449c/- |
| Rv0569/- | (cc=0.5544) | info on Rv0569/- |
| Rv0421c/- | (cc=0.5515) | info on Rv0421c/- |
| Rv3607c/folB | (cc=0.5499) | info on Rv3607c/folB |
| Rv2669/- | (cc=0.5487) | info on Rv2669/- |
Correlation of Rv1973/- with Rv2669/-
Normalized LFCs for Rv1973/-:
(description and provenance of datasets)
| Rv1973/- | Rv2669/- | |
| Fe_supp_jason_reseq | -0.881 | -0.069 |
| low_pH_jason_reseq | 1.139 | -1.332 |
| NO_jason_reseq | 1.339 | -1.205 |
| B6_jason_reseq | 0.457 | 3.037 |
| MHCII_jason_reseq | 0.984 | 2.498 |
| Isoniazid02 | 0.33 | 0.706 |
| Rifampicin4 | 0.712 | 0.49 |
| Ethambutol3 | 0.061 | -0.122 |
| Meropenem3 | -0.217 | 0.0 |
| Vancomycin16 | 0.846 | 0.698 |
| Rv2680_day32 | -0.459 | -0.875 |
| H37Rv_KO_MarP | 0.048 | 2.138 |
| hypoxia_3wks | 0.307 | -0.961 |
| hypoxia_6wks | -0.084 | 0.309 |
| glycerol | 0.638 | 1.34 |
| cholesterol | -0.659 | 1.133 |
| AJ | 0.417 | -0.398 |
| Bibs02 | 0.404 | 0.126 |
| Bibs02c | -1.55 | 0.191 |
| BL6 | -1.047 | 0.227 |
| BL6a | -1.296 | -1.116 |
| BXD01 | -1.28 | -1.807 |
| BXD010 | -1.968 | -2.339 |
| BXD011 | -2.528 | -2.809 |
| BXD03 | -2.961 | -3.074 |
| BXD04 | -2.129 | -0.599 |
| BXD05 | -2.528 | -2.654 |
| BXD06 | -2.26 | -2.704 |
| BXD07 | -2.384 | -3.148 |
| BXD08 | -0.474 | -1.028 |
| BXD09 | -2.092 | -1.753 |
| CAST | 0.038 | -0.27 |
| CCcont | -2.059 | -1.547 |
| DS01 | 0.879 | 1.702 |
| DS02 | -0.775 | 1.15 |
| DS04 | -1.095 | 1.428 |
| DS0c | -0.382 | 0.506 |
| GP01 | 0.942 | -2.315 |
| GP02 | 1.323 | -0.686 |
| GP0c | 1.077 | -0.337 |
| NOD | 0.652 | 2.193 |
| NZO | 0.63 | 0.0 |
| PWK | 0.369 | -0.74 |
| H37Rv_KO_CtpC | -1.15 | -0.85 |
| H37Rv_KO_CtpD | -1.694 | -3.068 |
| H37Rv_KO_Rv1272 | -2.388 | -3.802 |
| H37Rv_KO_SugABC | -2.545 | 0.268 |
| H37Rv_KO_MbtN | 0.929 | -2.497 |
| Trans05 | -0.827 | -3.393 |
| macrophage_unactivated | -0.082 | -1.31 |
| IL1 | -2.317 | -3.921 |
| Rapamycin | -3.861 | -4.057 |
| Tcell | -0.74 | -1.678 |
| GMCSF | -2.184 | -1.497 |
| IFNab | -0.877 | -2.606 |
| IFNg | -1.424 | -4.049 |
| IFNg_GMCSF1 | -0.616 | -1.012 |
| Rv1432_day32 | -0.604 | 0.0 |
| Rv1565c_day32 | -1.071 | 0.284 |
| secA2_input | 1.531 | 0.302 |
| delta_Rv3594 | 0.213 | 1.741 |
| delta_Rv3717 | 0.194 | 1.995 |
| delta_Rv3811 | 2.074 | 1.787 |
| delta_Rv0954 | 1.729 | -0.096 |
| PonA1 | 0.605 | 0.372 |
| EccD1_KO | 1.411 | -0.181 |
| EspI_KO | 0.268 | -1.708 |
| PE35_KO | -1.158 | 0.155 |
| PPE68_KO | -0.227 | -0.176 |
| glycerol2 | -0.374 | 1.014 |
| lignocerate | -0.861 | 0.216 |
| oleate | 0.642 | 0.366 |
| phosphatidylcholine | -0.405 | 0.667 |
| acetate | -1.011 | -0.336 |
| glucAc | -1.015 | 0.239 |
| Rv0950ko | -0.157 | 0.229 |
| Rv1096ko | 0.226 | 0.947 |
| Rv3684ko | -1.074 | 2.204 |
| delta_otsA_trehalose | -0.11 | 0.075 |