Top 10 genes with highest correlation to Rv1964/yrbE3A:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0315/- | (cc=0.5116) | info on Rv0315/- |
| Rv0154c/fadE2 | (cc=0.4934) | info on Rv0154c/fadE2 |
| Rv2045c/lipT | (cc=0.4847) | info on Rv2045c/lipT |
| Rv2758c/vapB21 | (cc=0.4781) | info on Rv2758c/vapB21 |
| Rv3314c/deoA | (cc=0.4712) | info on Rv3314c/deoA |
| Rv2038c/- | (cc=0.4681) | info on Rv2038c/- |
| Rv1830/- | (cc=0.4675) | info on Rv1830/- |
| Rv3229c/desA3 | (cc=0.4621) | info on Rv3229c/desA3 |
| Rv1772/- | (cc=0.4517) | info on Rv1772/- |
| Rv3747/- | (cc=0.4399) | info on Rv3747/- |
Correlation of Rv1964/yrbE3A with Rv1772/-
Normalized LFCs for Rv1964/yrbE3A:
(description and provenance of datasets)
| Rv1964/yrbE3A | Rv1772/- | |
| Fe_supp_jason_reseq | -0.073 | -3.334 |
| low_pH_jason_reseq | -0.617 | -1.822 |
| NO_jason_reseq | -0.462 | -0.68 |
| B6_jason_reseq | -2.076 | -2.688 |
| MHCII_jason_reseq | -0.791 | -3.659 |
| Isoniazid02 | 0.354 | 0.354 |
| Rifampicin4 | 0.761 | -1.543 |
| Ethambutol3 | 0.846 | 1.497 |
| Meropenem3 | 0.583 | 0.973 |
| Vancomycin16 | 0.615 | 0.154 |
| Rv2680_day32 | -1.004 | -0.828 |
| H37Rv_KO_MarP | -0.26 | -0.799 |
| hypoxia_3wks | 0.283 | -1.049 |
| hypoxia_6wks | -0.044 | -1.138 |
| glycerol | -1.295 | -1.546 |
| cholesterol | -0.733 | 0.384 |
| AJ | 0.254 | 0.65 |
| Bibs02 | -0.596 | 0.107 |
| Bibs02c | 0.045 | 0.082 |
| BL6 | 0.527 | 1.146 |
| BL6a | -0.221 | 1.551 |
| BXD01 | -0.106 | -0.501 |
| BXD010 | -0.215 | -1.496 |
| BXD011 | 0.438 | 0.099 |
| BXD03 | 0.712 | 0.851 |
| BXD04 | 0.135 | -0.668 |
| BXD05 | -0.197 | 1.785 |
| BXD06 | 0.097 | -0.967 |
| BXD07 | 0.104 | 0.345 |
| BXD08 | 0.667 | -0.911 |
| BXD09 | -0.095 | -0.18 |
| CAST | -0.966 | -0.295 |
| CCcont | 0.193 | -0.49 |
| DS01 | -0.662 | -0.527 |
| DS02 | -0.422 | 2.083 |
| DS04 | -0.436 | 0.603 |
| DS0c | -0.154 | -1.752 |
| GP01 | 1.515 | 0.307 |
| GP02 | -1.02 | -1.275 |
| GP0c | -0.057 | -1.109 |
| NOD | 0.758 | 3.695 |
| NZO | -0.692 | -0.256 |
| PWK | -0.672 | 1.421 |
| H37Rv_KO_CtpC | 0.933 | 1.419 |
| H37Rv_KO_CtpD | 1.268 | -1.405 |
| H37Rv_KO_Rv1272 | 0.787 | 0.0 |
| H37Rv_KO_SugABC | -1.387 | -1.22 |
| H37Rv_KO_MbtN | 1.105 | 2.598 |
| Trans05 | 0.554 | -1.609 |
| macrophage_unactivated | 0.297 | 0.754 |
| IL1 | -0.383 | -0.086 |
| Rapamycin | -0.04 | 1.093 |
| Tcell | 0.163 | 1.844 |
| GMCSF | 0.28 | -0.945 |
| IFNab | 0.475 | 0.088 |
| IFNg | 1.36 | 2.392 |
| IFNg_GMCSF1 | 0.383 | 2.91 |
| Rv1432_day32 | 0.039 | -2.282 |
| Rv1565c_day32 | -0.272 | 0.0 |
| secA2_input | 0.24 | -0.941 |
| delta_Rv3594 | 0.405 | 1.225 |
| delta_Rv3717 | 0.258 | 0.603 |
| delta_Rv3811 | 0.721 | -1.022 |
| delta_Rv0954 | 0.669 | -1.292 |
| PonA1 | 0.084 | -0.793 |
| EccD1_KO | -0.664 | -2.131 |
| EspI_KO | -0.662 | -2.059 |
| PE35_KO | -0.379 | -1.619 |
| PPE68_KO | -0.31 | -0.921 |
| glycerol2 | 0.153 | 0.988 |
| lignocerate | 0.509 | 1.841 |
| oleate | -0.634 | -1.494 |
| phosphatidylcholine | 0.136 | 0.794 |
| acetate | 1.124 | 2.031 |
| glucAc | 0.876 | 0.157 |
| Rv0950ko | 0.151 | 0.582 |
| Rv1096ko | 0.48 | -0.211 |
| Rv3684ko | 0.888 | 1.89 |
| delta_otsA_trehalose | 0.359 | -1.296 |