Top 10 genes with highest correlation to Rv1961/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0829/- | (cc=0.4921) | info on Rv0829/- |
| Rv0731c/- | (cc=0.4837) | info on Rv0731c/- |
| Rv1686c/- | (cc=0.4795) | info on Rv1686c/- |
| Rv2425c/- | (cc=0.4769) | info on Rv2425c/- |
| Rv1830/- | (cc=0.4741) | info on Rv1830/- |
| Rv2896c/- | (cc=0.4625) | info on Rv2896c/- |
| Rv0858c/dapC | (cc=0.4557) | info on Rv0858c/dapC |
| Rv0142/- | (cc=0.4538) | info on Rv0142/- |
| Rv0620/galK | (cc=0.4532) | info on Rv0620/galK |
| Rv0222/echA1 | (cc=0.4519) | info on Rv0222/echA1 |
Correlation of Rv1961/- with Rv0222/echA1
Normalized LFCs for Rv1961/-:
(description and provenance of datasets)
| Rv1961/- | Rv0222/echA1 | |
| Fe_supp_jason_reseq | -2.406 | -3.435 |
| low_pH_jason_reseq | -2.08 | -2.431 |
| NO_jason_reseq | 0.184 | 0.465 |
| B6_jason_reseq | -1.989 | -3.258 |
| MHCII_jason_reseq | -1.677 | -1.782 |
| Isoniazid02 | 0.236 | -0.8 |
| Rifampicin4 | -0.06 | -0.582 |
| Ethambutol3 | -0.407 | -0.164 |
| Meropenem3 | -0.386 | -0.258 |
| Vancomycin16 | -0.114 | -0.57 |
| Rv2680_day32 | -1.231 | -0.048 |
| H37Rv_KO_MarP | -0.188 | -0.138 |
| hypoxia_3wks | -0.929 | 0.63 |
| hypoxia_6wks | -0.411 | -0.065 |
| glycerol | 0.13 | -0.035 |
| cholesterol | -0.233 | 0.861 |
| AJ | 0.533 | 0.442 |
| Bibs02 | 0.242 | -0.237 |
| Bibs02c | -0.399 | -0.887 |
| BL6 | 0.758 | 1.376 |
| BL6a | -0.118 | 0.672 |
| BXD01 | -0.901 | -0.046 |
| BXD010 | -0.906 | -0.191 |
| BXD011 | -0.524 | 1.09 |
| BXD03 | -0.369 | 1.092 |
| BXD04 | -0.494 | 2.172 |
| BXD05 | 0.076 | 1.202 |
| BXD06 | -0.241 | 0.293 |
| BXD07 | 0.272 | 0.891 |
| BXD08 | 0.156 | 1.148 |
| BXD09 | -0.147 | 0.863 |
| CAST | 0.287 | 0.662 |
| CCcont | -0.33 | 0.75 |
| DS01 | 0.527 | -0.306 |
| DS02 | 0.158 | 0.625 |
| DS04 | 0.843 | 2.54 |
| DS0c | -0.789 | 0.317 |
| GP01 | 0.532 | 1.765 |
| GP02 | 1.445 | 1.928 |
| GP0c | 1.337 | 1.358 |
| NOD | -0.496 | 1.741 |
| NZO | 0.92 | -0.035 |
| PWK | -1.091 | -0.78 |
| H37Rv_KO_CtpC | 0.04 | 0.028 |
| H37Rv_KO_CtpD | -0.241 | 1.355 |
| H37Rv_KO_Rv1272 | -0.254 | -0.025 |
| H37Rv_KO_SugABC | 0.123 | 0.682 |
| H37Rv_KO_MbtN | -0.052 | 2.338 |
| Trans05 | -0.223 | -1.09 |
| macrophage_unactivated | -1.225 | -0.035 |
| IL1 | -0.219 | 1.207 |
| Rapamycin | 0.031 | 0.767 |
| Tcell | -0.277 | 0.342 |
| GMCSF | 0.264 | 0.539 |
| IFNab | 0.184 | -0.133 |
| IFNg | -0.377 | 0.059 |
| IFNg_GMCSF1 | 0.063 | 0.101 |
| Rv1432_day32 | 0.331 | 0.18 |
| Rv1565c_day32 | -0.595 | 0.025 |
| secA2_input | 0.13 | -0.794 |
| delta_Rv3594 | 0.171 | -0.187 |
| delta_Rv3717 | 0.858 | -0.607 |
| delta_Rv3811 | 1.316 | -0.379 |
| delta_Rv0954 | 0.51 | -0.242 |
| PonA1 | -0.609 | -0.435 |
| EccD1_KO | -0.158 | -1.727 |
| EspI_KO | -0.511 | -0.268 |
| PE35_KO | -0.618 | 0.175 |
| PPE68_KO | -0.154 | -0.909 |
| glycerol2 | -0.118 | -0.888 |
| lignocerate | 0.587 | -0.919 |
| oleate | -1.456 | -0.207 |
| phosphatidylcholine | 0.182 | -0.689 |
| acetate | 1.076 | -0.447 |
| glucAc | 1.194 | -1.339 |
| Rv0950ko | 0.917 | 0.751 |
| Rv1096ko | 0.66 | 1.3 |
| Rv3684ko | 0.357 | 0.0 |
| delta_otsA_trehalose | -0.152 | -0.267 |