Top 10 genes with highest correlation to Rv1961/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0829/- | (cc=0.4921) | info on Rv0829/- |
| Rv0731c/- | (cc=0.4837) | info on Rv0731c/- |
| Rv1686c/- | (cc=0.4795) | info on Rv1686c/- |
| Rv2425c/- | (cc=0.4769) | info on Rv2425c/- |
| Rv1830/- | (cc=0.4741) | info on Rv1830/- |
| Rv2896c/- | (cc=0.4625) | info on Rv2896c/- |
| Rv0858c/dapC | (cc=0.4557) | info on Rv0858c/dapC |
| Rv0142/- | (cc=0.4538) | info on Rv0142/- |
| Rv0620/galK | (cc=0.4532) | info on Rv0620/galK |
| Rv0222/echA1 | (cc=0.4519) | info on Rv0222/echA1 |
Correlation of Rv1961/- with Rv0829/-
Normalized LFCs for Rv1961/-:
(description and provenance of datasets)
| Rv1961/- | Rv0829/- | |
| Fe_supp_jason_reseq | -2.406 | -1.781 |
| low_pH_jason_reseq | -2.08 | -1.298 |
| NO_jason_reseq | 0.184 | 0.362 |
| B6_jason_reseq | -1.989 | -0.678 |
| MHCII_jason_reseq | -1.677 | -0.448 |
| Isoniazid02 | 0.236 | 0.154 |
| Rifampicin4 | -0.06 | -0.328 |
| Ethambutol3 | -0.407 | 0.315 |
| Meropenem3 | -0.386 | 0.246 |
| Vancomycin16 | -0.114 | -0.801 |
| Rv2680_day32 | -1.231 | -0.548 |
| H37Rv_KO_MarP | -0.188 | 0.308 |
| hypoxia_3wks | -0.929 | 0.251 |
| hypoxia_6wks | -0.411 | -0.257 |
| glycerol | 0.13 | -2.313 |
| cholesterol | -0.233 | -1.522 |
| AJ | 0.533 | 0.378 |
| Bibs02 | 0.242 | 0.717 |
| Bibs02c | -0.399 | -0.349 |
| BL6 | 0.758 | 0.106 |
| BL6a | -0.118 | -0.066 |
| BXD01 | -0.901 | -0.089 |
| BXD010 | -0.906 | -0.213 |
| BXD011 | -0.524 | -0.465 |
| BXD03 | -0.369 | 0.108 |
| BXD04 | -0.494 | -0.966 |
| BXD05 | 0.076 | 0.53 |
| BXD06 | -0.241 | -0.119 |
| BXD07 | 0.272 | -0.357 |
| BXD08 | 0.156 | -0.571 |
| BXD09 | -0.147 | -0.372 |
| CAST | 0.287 | 0.093 |
| CCcont | -0.33 | 0.025 |
| DS01 | 0.527 | 0.477 |
| DS02 | 0.158 | -0.889 |
| DS04 | 0.843 | 0.999 |
| DS0c | -0.789 | -0.2 |
| GP01 | 0.532 | -0.368 |
| GP02 | 1.445 | 0.967 |
| GP0c | 1.337 | -0.569 |
| NOD | -0.496 | -0.441 |
| NZO | 0.92 | 0.564 |
| PWK | -1.091 | 0.939 |
| H37Rv_KO_CtpC | 0.04 | -0.115 |
| H37Rv_KO_CtpD | -0.241 | -0.24 |
| H37Rv_KO_Rv1272 | -0.254 | -0.338 |
| H37Rv_KO_SugABC | 0.123 | 0.738 |
| H37Rv_KO_MbtN | -0.052 | -0.499 |
| Trans05 | -0.223 | -0.074 |
| macrophage_unactivated | -1.225 | -0.243 |
| IL1 | -0.219 | -0.217 |
| Rapamycin | 0.031 | -0.589 |
| Tcell | -0.277 | 0.134 |
| GMCSF | 0.264 | 0.304 |
| IFNab | 0.184 | -0.354 |
| IFNg | -0.377 | -0.051 |
| IFNg_GMCSF1 | 0.063 | 0.449 |
| Rv1432_day32 | 0.331 | 1.229 |
| Rv1565c_day32 | -0.595 | 0.0 |
| secA2_input | 0.13 | -0.089 |
| delta_Rv3594 | 0.171 | 1.649 |
| delta_Rv3717 | 0.858 | 1.836 |
| delta_Rv3811 | 1.316 | 2.104 |
| delta_Rv0954 | 0.51 | 1.512 |
| PonA1 | -0.609 | 0.794 |
| EccD1_KO | -0.158 | 0.411 |
| EspI_KO | -0.511 | 0.633 |
| PE35_KO | -0.618 | 0.12 |
| PPE68_KO | -0.154 | 0.339 |
| glycerol2 | -0.118 | 0.933 |
| lignocerate | 0.587 | 1.142 |
| oleate | -1.456 | 0.216 |
| phosphatidylcholine | 0.182 | 1.0 |
| acetate | 1.076 | 0.673 |
| glucAc | 1.194 | 1.027 |
| Rv0950ko | 0.917 | 0.16 |
| Rv1096ko | 0.66 | 1.948 |
| Rv3684ko | 0.357 | 0.079 |
| delta_otsA_trehalose | -0.152 | -0.385 |