Top 10 genes with highest correlation to Rv1945/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1148c/- | (cc=0.6375) | info on Rv1148c/- |
| Rv2597/- | (cc=0.6085) | info on Rv2597/- |
| Rv1716/- | (cc=0.5593) | info on Rv1716/- |
| Rv3566c/nat | (cc=0.5159) | info on Rv3566c/nat |
| Rv1969/mce3D | (cc=0.5142) | info on Rv1969/mce3D |
| Rv1068c/PE_PGRS20 | (cc=0.5015) | info on Rv1068c/PE_PGRS20 |
| Rv2431c/PE25 | (cc=0.4997) | info on Rv2431c/PE25 |
| Rv3329/- | (cc=0.496) | info on Rv3329/- |
| Rv0961/- | (cc=0.4853) | info on Rv0961/- |
| Rv1101c/- | (cc=0.4654) | info on Rv1101c/- |
Correlation of Rv1945/- with Rv1068c/PE_PGRS20
Normalized LFCs for Rv1945/-:
(description and provenance of datasets)
| Rv1945/- | Rv1068c/PE_PGRS20 | |
| Fe_supp_jason_reseq | -0.095 | 0.224 |
| low_pH_jason_reseq | 0.059 | 1.673 |
| NO_jason_reseq | 0.06 | 0.373 |
| B6_jason_reseq | -0.269 | -0.557 |
| MHCII_jason_reseq | -0.023 | -0.538 |
| Isoniazid02 | -2.426 | -2.935 |
| Rifampicin4 | 0.168 | -2.031 |
| Ethambutol3 | -2.053 | -2.291 |
| Meropenem3 | -1.997 | -2.096 |
| Vancomycin16 | -1.151 | -1.929 |
| Rv2680_day32 | 0.181 | 0.771 |
| H37Rv_KO_MarP | -0.109 | -0.138 |
| hypoxia_3wks | 0.104 | -0.175 |
| hypoxia_6wks | 0.027 | 0.113 |
| glycerol | -0.336 | -0.042 |
| cholesterol | 0.012 | -0.183 |
| AJ | 0.612 | 0.0 |
| Bibs02 | 0.073 | 0.111 |
| Bibs02c | 0.717 | 0.1 |
| BL6 | -0.456 | -0.597 |
| BL6a | 0.446 | 0.185 |
| BXD01 | -0.536 | -0.124 |
| BXD010 | -0.674 | 0.035 |
| BXD011 | -0.571 | -0.13 |
| BXD03 | -0.374 | 0.073 |
| BXD04 | -0.524 | -0.461 |
| BXD05 | 0.064 | -0.349 |
| BXD06 | -0.397 | -0.395 |
| BXD07 | -0.489 | -0.41 |
| BXD08 | -0.089 | 0.072 |
| BXD09 | -0.156 | -0.122 |
| CAST | 0.592 | -0.619 |
| CCcont | -0.888 | -0.322 |
| DS01 | 0.578 | 0.265 |
| DS02 | 0.95 | 0.337 |
| DS04 | 1.382 | 0.229 |
| DS0c | 1.105 | 0.72 |
| GP01 | 0.592 | -0.55 |
| GP02 | 0.171 | 0.637 |
| GP0c | -0.567 | -0.906 |
| NOD | -0.229 | -0.706 |
| NZO | 0.707 | -0.347 |
| PWK | 0.31 | -0.458 |
| H37Rv_KO_CtpC | 0.065 | -0.379 |
| H37Rv_KO_CtpD | 1.035 | 0.44 |
| H37Rv_KO_Rv1272 | 0.045 | -0.167 |
| H37Rv_KO_SugABC | -0.233 | -0.677 |
| H37Rv_KO_MbtN | 0.388 | 0.022 |
| Trans05 | 0.463 | -0.305 |
| macrophage_unactivated | -0.849 | -0.881 |
| IL1 | 0.35 | -1.332 |
| Rapamycin | -0.77 | -0.601 |
| Tcell | -0.587 | -1.033 |
| GMCSF | -0.71 | 0.182 |
| IFNab | -0.813 | -1.4 |
| IFNg | -0.342 | -0.617 |
| IFNg_GMCSF1 | -0.047 | 0.28 |
| Rv1432_day32 | -0.286 | 0.312 |
| Rv1565c_day32 | 6.0 | 0.588 |
| secA2_input | -0.338 | -0.59 |
| delta_Rv3594 | -0.05 | 0.647 |
| delta_Rv3717 | 0.573 | 0.223 |
| delta_Rv3811 | 0.207 | 0.57 |
| delta_Rv0954 | 0.572 | 0.615 |
| PonA1 | 0.276 | 0.667 |
| EccD1_KO | -0.368 | -0.434 |
| EspI_KO | 1.141 | 0.371 |
| PE35_KO | 0.303 | 0.505 |
| PPE68_KO | 1.011 | 0.33 |
| glycerol2 | -0.247 | -0.886 |
| lignocerate | -0.387 | -0.838 |
| oleate | 0.333 | -1.272 |
| phosphatidylcholine | 0.122 | -1.13 |
| acetate | -0.101 | 0.047 |
| glucAc | -0.701 | 0.106 |
| Rv0950ko | -0.317 | -0.748 |
| Rv1096ko | -0.178 | -0.579 |
| Rv3684ko | 0.495 | -1.002 |
| delta_otsA_trehalose | 0.26 | 1.865 |