Top 10 genes with highest correlation to Rv1945/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1148c/- | (cc=0.6375) | info on Rv1148c/- |
| Rv2597/- | (cc=0.6085) | info on Rv2597/- |
| Rv1716/- | (cc=0.5593) | info on Rv1716/- |
| Rv3566c/nat | (cc=0.5159) | info on Rv3566c/nat |
| Rv1969/mce3D | (cc=0.5142) | info on Rv1969/mce3D |
| Rv1068c/PE_PGRS20 | (cc=0.5015) | info on Rv1068c/PE_PGRS20 |
| Rv2431c/PE25 | (cc=0.4997) | info on Rv2431c/PE25 |
| Rv3329/- | (cc=0.496) | info on Rv3329/- |
| Rv0961/- | (cc=0.4853) | info on Rv0961/- |
| Rv1101c/- | (cc=0.4654) | info on Rv1101c/- |
Correlation of Rv1945/- with Rv1148c/-
Normalized LFCs for Rv1945/-:
(description and provenance of datasets)
| Rv1945/- | Rv1148c/- | |
| Fe_supp_jason_reseq | -0.095 | -0.382 |
| low_pH_jason_reseq | 0.059 | 0.241 |
| NO_jason_reseq | 0.06 | 0.302 |
| B6_jason_reseq | -0.269 | 0.404 |
| MHCII_jason_reseq | -0.023 | 0.684 |
| Isoniazid02 | -2.426 | -1.86 |
| Rifampicin4 | 0.168 | -0.422 |
| Ethambutol3 | -2.053 | -1.462 |
| Meropenem3 | -1.997 | -1.765 |
| Vancomycin16 | -1.151 | -1.321 |
| Rv2680_day32 | 0.181 | 0.029 |
| H37Rv_KO_MarP | -0.109 | 0.357 |
| hypoxia_3wks | 0.104 | 0.04 |
| hypoxia_6wks | 0.027 | 0.061 |
| glycerol | -0.336 | -0.771 |
| cholesterol | 0.012 | -0.533 |
| AJ | 0.612 | 0.751 |
| Bibs02 | 0.073 | -0.142 |
| Bibs02c | 0.717 | 0.409 |
| BL6 | -0.456 | -0.781 |
| BL6a | 0.446 | 0.152 |
| BXD01 | -0.536 | -0.755 |
| BXD010 | -0.674 | -0.426 |
| BXD011 | -0.571 | -0.398 |
| BXD03 | -0.374 | -0.259 |
| BXD04 | -0.524 | -0.537 |
| BXD05 | 0.064 | -0.062 |
| BXD06 | -0.397 | -0.54 |
| BXD07 | -0.489 | -0.611 |
| BXD08 | -0.089 | -0.47 |
| BXD09 | -0.156 | -0.338 |
| CAST | 0.592 | 0.392 |
| CCcont | -0.888 | -1.578 |
| DS01 | 0.578 | 0.046 |
| DS02 | 0.95 | 0.085 |
| DS04 | 1.382 | 0.72 |
| DS0c | 1.105 | 0.256 |
| GP01 | 0.592 | -0.269 |
| GP02 | 0.171 | -0.582 |
| GP0c | -0.567 | -0.645 |
| NOD | -0.229 | -0.225 |
| NZO | 0.707 | 0.526 |
| PWK | 0.31 | 0.342 |
| H37Rv_KO_CtpC | 0.065 | 0.277 |
| H37Rv_KO_CtpD | 1.035 | -0.184 |
| H37Rv_KO_Rv1272 | 0.045 | -0.7 |
| H37Rv_KO_SugABC | -0.233 | -0.22 |
| H37Rv_KO_MbtN | 0.388 | -0.173 |
| Trans05 | 0.463 | -0.159 |
| macrophage_unactivated | -0.849 | -0.748 |
| IL1 | 0.35 | -0.113 |
| Rapamycin | -0.77 | -0.46 |
| Tcell | -0.587 | -0.665 |
| GMCSF | -0.71 | 0.024 |
| IFNab | -0.813 | -0.266 |
| IFNg | -0.342 | 0.126 |
| IFNg_GMCSF1 | -0.047 | 0.116 |
| Rv1432_day32 | -0.286 | 0.164 |
| Rv1565c_day32 | 6.0 | 0.652 |
| secA2_input | -0.338 | 0.177 |
| delta_Rv3594 | -0.05 | 0.601 |
| delta_Rv3717 | 0.573 | 0.563 |
| delta_Rv3811 | 0.207 | 0.552 |
| delta_Rv0954 | 0.572 | 0.762 |
| PonA1 | 0.276 | 0.321 |
| EccD1_KO | -0.368 | 0.576 |
| EspI_KO | 1.141 | 0.975 |
| PE35_KO | 0.303 | 0.28 |
| PPE68_KO | 1.011 | 1.062 |
| glycerol2 | -0.247 | -0.08 |
| lignocerate | -0.387 | -0.348 |
| oleate | 0.333 | 0.213 |
| phosphatidylcholine | 0.122 | 0.108 |
| acetate | -0.101 | -0.52 |
| glucAc | -0.701 | -0.797 |
| Rv0950ko | -0.317 | -0.211 |
| Rv1096ko | -0.178 | 0.446 |
| Rv3684ko | 0.495 | 0.219 |
| delta_otsA_trehalose | 0.26 | 0.487 |