Top 10 genes with highest correlation to Rv1880c/cyp140:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3059/cyp136 | (cc=0.7003) | info on Rv3059/cyp136 |
| Rv3354/- | (cc=0.6594) | info on Rv3354/- |
| Rv2499c/- | (cc=0.6544) | info on Rv2499c/- |
| Rv0089/- | (cc=0.6503) | info on Rv0089/- |
| Rv3295/- | (cc=0.6454) | info on Rv3295/- |
| Rv2007c/fdxA | (cc=0.6354) | info on Rv2007c/fdxA |
| Rv3058c/- | (cc=0.5992) | info on Rv3058c/- |
| Rv2633c/- | (cc=0.5949) | info on Rv2633c/- |
| Rv1999c/- | (cc=0.5923) | info on Rv1999c/- |
| Rv1974/- | (cc=0.5831) | info on Rv1974/- |
Correlation of Rv1880c/cyp140 with Rv3295/-
Normalized LFCs for Rv1880c/cyp140:
(description and provenance of datasets)
| Rv1880c/cyp140 | Rv3295/- | |
| Fe_supp_jason_reseq | -0.706 | -0.311 |
| low_pH_jason_reseq | -0.391 | -1.467 |
| NO_jason_reseq | 0.084 | 0.399 |
| B6_jason_reseq | -0.111 | 1.709 |
| MHCII_jason_reseq | 0.084 | 2.745 |
| Isoniazid02 | 0.866 | -0.08 |
| Rifampicin4 | -0.533 | -0.736 |
| Ethambutol3 | 0.652 | -0.766 |
| Meropenem3 | 0.491 | 1.594 |
| Vancomycin16 | -0.05 | -2.144 |
| Rv2680_day32 | 0.843 | -0.028 |
| H37Rv_KO_MarP | -0.464 | 0.872 |
| hypoxia_3wks | -0.319 | 0.04 |
| hypoxia_6wks | 0.0 | 0.069 |
| glycerol | -0.456 | -1.066 |
| cholesterol | 0.304 | -0.911 |
| AJ | -0.203 | -0.094 |
| Bibs02 | 0.634 | -0.197 |
| Bibs02c | -0.15 | -0.488 |
| BL6 | -0.613 | -1.617 |
| BL6a | -0.748 | -1.21 |
| BXD01 | -0.52 | -2.04 |
| BXD010 | -0.243 | -1.261 |
| BXD011 | -0.058 | -1.45 |
| BXD03 | -0.763 | -1.975 |
| BXD04 | -0.177 | -1.206 |
| BXD05 | -0.007 | -1.799 |
| BXD06 | -0.403 | -1.84 |
| BXD07 | -0.734 | -1.907 |
| BXD08 | -0.42 | -2.202 |
| BXD09 | -0.829 | -1.692 |
| CAST | 0.259 | -0.377 |
| CCcont | -0.744 | -2.55 |
| DS01 | -0.351 | -0.573 |
| DS02 | -0.614 | -0.243 |
| DS04 | -0.535 | -1.214 |
| DS0c | -0.121 | -0.159 |
| GP01 | -0.423 | -0.495 |
| GP02 | -0.115 | -1.862 |
| GP0c | -0.789 | -3.192 |
| NOD | 0.407 | 0.265 |
| NZO | 0.215 | 0.438 |
| PWK | 0.141 | -0.034 |
| H37Rv_KO_CtpC | -0.903 | -1.189 |
| H37Rv_KO_CtpD | -0.506 | -0.309 |
| H37Rv_KO_Rv1272 | 0.208 | -0.822 |
| H37Rv_KO_SugABC | -0.763 | -1.536 |
| H37Rv_KO_MbtN | -1.618 | -2.764 |
| Trans05 | -0.287 | -1.09 |
| macrophage_unactivated | -1.102 | -3.033 |
| IL1 | -0.255 | -2.637 |
| Rapamycin | -0.519 | -2.998 |
| Tcell | -0.28 | -2.77 |
| GMCSF | -0.021 | -2.389 |
| IFNab | -0.481 | -4.099 |
| IFNg | -0.684 | -1.86 |
| IFNg_GMCSF1 | -0.189 | -1.555 |
| Rv1432_day32 | -0.175 | 0.528 |
| Rv1565c_day32 | 0.663 | 1.414 |
| secA2_input | -0.454 | 0.819 |
| delta_Rv3594 | 0.124 | -0.159 |
| delta_Rv3717 | -0.41 | -0.35 |
| delta_Rv3811 | -0.012 | -0.437 |
| delta_Rv0954 | 0.032 | -0.012 |
| PonA1 | 0.057 | 0.697 |
| EccD1_KO | 0.582 | -0.536 |
| EspI_KO | 0.482 | -0.442 |
| PE35_KO | 0.63 | -0.096 |
| PPE68_KO | 0.464 | 0.067 |
| glycerol2 | 1.843 | 2.42 |
| lignocerate | 0.972 | 1.125 |
| oleate | 0.418 | -0.113 |
| phosphatidylcholine | 1.036 | 2.459 |
| acetate | 0.49 | 0.436 |
| glucAc | 0.36 | 0.323 |
| Rv0950ko | 0.709 | 1.019 |
| Rv1096ko | 0.241 | 0.338 |
| Rv3684ko | 0.196 | 0.907 |
| delta_otsA_trehalose | 1.179 | 0.261 |